Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQM58_RS09960 Genome accession   NZ_LS483363
Coordinates   1963439..1964800 (-) Length   453 a.a.
NCBI ID   WP_046159249.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC9414     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1958439..1969800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM58_RS09935 (NCTC9414_02029) - 1959160..1960428 (-) 1269 WP_012767572.1 MFS transporter -
  DQM58_RS09940 (NCTC9414_02030) - 1960523..1961224 (-) 702 WP_003053382.1 hypothetical protein -
  DQM58_RS09945 (NCTC9414_02031) - 1961228..1961674 (-) 447 WP_003053367.1 LytTR family DNA-binding domain-containing protein -
  DQM58_RS09950 (NCTC9414_02032) - 1961903..1962619 (-) 717 WP_015058072.1 TIGR00266 family protein -
  DQM58_RS09955 (NCTC9414_02033) - 1962755..1963249 (-) 495 WP_003053380.1 carbonic anhydrase -
  DQM58_RS09960 (NCTC9414_02034) radA 1963439..1964800 (-) 1362 WP_046159249.1 DNA repair protein RadA Machinery gene
  DQM58_RS09965 (NCTC9414_02035) - 1964883..1965329 (-) 447 WP_003053378.1 dUTP diphosphatase -
  DQM58_RS09970 (NCTC9414_02036) - 1965437..1966204 (-) 768 WP_014612596.1 epoxyqueuosine reductase QueH -
  DQM58_RS09975 (NCTC9414_02037) - 1966323..1968107 (-) 1785 WP_111706162.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49351.66 Da        Isoelectric Point: 6.0944

>NTDB_id=1138634 DQM58_RS09960 WP_046159249.1 1963439..1964800(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9414]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPVKLKDVDNISYHRTQTDMAEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NLNPDFLIIDSIQTIISPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEIQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGISIPNGIEVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1138634 DQM58_RS09960 WP_046159249.1 1963439..1964800(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9414]
ATAGCAAAGAAAAAAGCAACCTTCATTTGTCAAGAATGTGGGTATCAGTCACCCAAATATTTAGGGCGTTGCCCAAACTG
CTCGGCCTGGTCTTCCTTTGTGGAAGAAGTTGAGGTCAAAGAGGTTAAAAATGCTCGTGTCAGTTTGACAGGTGAGAAAA
GTAAGCCCGTTAAATTAAAAGATGTGGACAATATCAGCTATCATCGGACACAGACCGATATGGCAGAGTTTAACCGTGTC
CTTGGTGGCGGTGTCGTTCCGGGGAGCTTGATTTTAATTGGTGGGGATCCAGGTATTGGGAAGTCCACCTTGCTCTTGCA
GGTATCTACCCAGCTAGCTAATAAGGGAACTGTTCTGTATGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTTCGGA
GTGAGCGTCTGGGGGATATTGACAATGAATTTTACCTCTATGCTGAAACCAATATGCAGGCCATTCGTACAGAGATTGAA
AACCTGAATCCAGATTTCTTGATTATTGATTCTATCCAAACCATTATAAGTCCTGATATTACAGGTGTTCAAGGATCAGT
GAGTCAGGTGAGAGAAGTCACTGCCGAATTGATGCAACTTGCAAAGACTAACAACATTGCAACCTTTATTGTAGGACATG
TTACCAAGGAAGGAACCTTAGCTGGTCCCCGTATGTTAGAACATATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCATACTTTTCGCATCTTGCGGGCGGTGAAAAACCGTTTTGGCTCTACCAACGAGATCGGCATTTTTGAAATGCAATC
AGCTGGACTTGTTGAGGTCTTAAACCCAAGCCAAGTTTTTCTTGAAGAACGATTAGATGGTGCTACAGGCTCCGCCATTG
TGGTGACCATGGAGGGTAGTCGTCCAATTTTAGCGGAAATCCAATCTTTGGTAACCCCAACCGTTTTTGGTAATGCTAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATAATGGCAGTTTTAGAAAAGCGCTGTGGGCTTCTCTTGCA
AAATCAAGATGCCTACCTCAAATCGGCTGGTGGTGTCAAGCTAGACGAACCTGCCATTGATTTAGCTGTAGCCGTAGCCA
TCGCATCCAGTTATAAAGAAAAACCAACCAACCCTCAGGAAGCCTTCTTAGGAGAGATTGGGTTGACTGGTGAGATTCGG
CGGGTGACCCGTATCGAACAACGAATTAATGAAGCAGCCAAGCTTGGTTTTACTAAAATTTACGCCCCTAAAAATGCTCT
GCAGGGCATCAGTATTCCTAATGGTATTGAAGTGGTGGGTGTGACAACAGTTGGTCAGGTTTTAAAGGCCGTTTTTGGCT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(57-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

86.283

99.779

0.861
  radA Streptococcus pneumoniae Rx1

86.062

99.779

0.859
  radA Streptococcus pneumoniae D39

86.062

99.779

0.859
  radA Streptococcus pneumoniae R6

86.062

99.779

0.859
  radA Streptococcus pneumoniae TIGR4

86.062

99.779

0.859
  radA Streptococcus mitis SK321

86.062

99.779

0.859
  radA Bacillus subtilis subsp. subtilis str. 168

62.144

100

0.627

Multiple sequence alignment