Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   DQM36_RS00330 Genome accession   NZ_LS483332
Coordinates   53557..54468 (+) Length   303 a.a.
NCBI ID   WP_002986681.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12696     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 48557..59468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM36_RS00315 (NCTC12696_00063) purK 48926..49999 (+) 1074 WP_038432714.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  DQM36_RS00320 (NCTC12696_00064) - 50015..51823 (+) 1809 WP_038432716.1 ATP-binding protein -
  DQM36_RS00325 (NCTC12696_00065) purB 52133..53425 (+) 1293 WP_038432718.1 adenylosuccinate lyase -
  DQM36_RS00330 (NCTC12696_00066) comR 53557..54468 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  DQM36_RS09965 (NCTC12696_00067) comS 54552..54647 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  DQM36_RS00335 (NCTC12696_00068) ruvB 54694..55692 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  DQM36_RS00340 (NCTC12696_00069) - 55830..56267 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  DQM36_RS00345 (NCTC12696_00070) - 56290..56691 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  DQM36_RS00350 (NCTC12696_00071) - 56688..58463 (+) 1776 WP_038432721.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 35757.27 Da        Isoelectric Point: 4.4858

>NTDB_id=1136940 DQM36_RS00330 WP_002986681.1 53557..54468(+) (comR) [Streptococcus pyogenes strain NCTC12696]
MLEHFGGKVKVLRLEKRISREDLCGDESELSVRQLARIELGQSIPSLSKVIFIAKALNVSVGYLTDGADLELPKRYKELK
YLILRTPTYMDDGKLQVREEQFDEIFEDYYDKLPEEEKIIIDCLQATLDTLLSENTNFGIDLLQEYFNQIKTKVRFRQND
LILLELYLAYLDIEGMDGQYSDKIFYDSLLDNLSEQFEQFELDELFIVNKIIIDISSLSLKNNRLDNLEKAIEMSQKIMA
KIQDWNRMPILKLIEWKYFLIKQKDIIKAEQSFMKACLFAQMTADQYLENKLIQEWEKDVKSY

Nucleotide


Download         Length: 912 bp        

>NTDB_id=1136940 DQM36_RS00330 WP_002986681.1 53557..54468(+) (comR) [Streptococcus pyogenes strain NCTC12696]
ATGTTAGAACATTTTGGTGGAAAAGTAAAAGTGTTAAGACTTGAAAAGAGGATTAGTCGCGAGGACTTGTGTGGGGATGA
GTCTGAACTTTCTGTTCGTCAATTAGCACGGATAGAACTAGGTCAATCCATACCAAGTTTAAGTAAGGTTATTTTTATTG
CAAAAGCCTTAAACGTTAGTGTCGGTTACTTAACTGATGGTGCTGATTTAGAACTACCTAAGCGTTACAAAGAATTAAAA
TACCTTATCTTAAGGACACCAACTTACATGGATGATGGAAAATTACAAGTACGAGAAGAGCAGTTTGATGAAATTTTTGA
GGATTATTATGATAAATTACCAGAGGAAGAGAAAATAATTATTGATTGTTTACAGGCAACTTTAGATACTTTATTGAGTG
AGAATACTAACTTTGGCATTGACTTACTTCAAGAATATTTTAATCAAATAAAGACTAAGGTACGCTTTAGGCAAAATGAT
TTAATACTTCTAGAATTATATTTAGCTTATCTTGATATTGAGGGAATGGATGGACAATATTCAGATAAGATTTTTTATGA
TTCTTTATTAGATAATCTATCAGAACAATTTGAACAATTTGAATTAGATGAATTATTTATAGTTAATAAGATTATCATTG
ATATTTCATCACTAAGCTTAAAAAATAACCGACTTGATAATTTAGAAAAAGCGATTGAAATGAGTCAAAAAATTATGGCG
AAAATTCAAGATTGGAATAGAATGCCTATTTTAAAACTAATAGAATGGAAATATTTTTTAATCAAACAAAAAGATATAAT
AAAAGCAGAACAATCATTTATGAAGGCATGTTTGTTCGCCCAAATGACAGCTGATCAGTATTTGGAAAACAAGTTAATTC
AAGAGTGGGAAAAAGATGTTAAAAGTTATTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(12-64)

ComR tetratricopeptide (ComR_TPR)

(73-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS8232

100

100

1
  comR Streptococcus pyogenes MGAS315

58.472

99.34

0.581
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

51.37

96.37

0.495
  comR Streptococcus mutans UA159

46.358

99.67

0.462

Multiple sequence alignment