Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   JM183_RS05815 Genome accession   NZ_LR962863
Coordinates   1239699..1242092 (+) Length   797 a.a.
NCBI ID   WP_126495986.1    Uniprot ID   -
Organism   Staphylococcus schleiferi strain NCTC12218     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1234699..1247092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM183_RS05790 (NCTC12218_01231) - 1234892..1235353 (-) 462 WP_155976504.1 transposase family protein -
  JM183_RS05795 (NCTC12218_01232) - 1235534..1236544 (-) 1011 WP_126495989.1 LLM class flavin-dependent oxidoreductase -
  JM183_RS05800 (NCTC12218_01233) - 1236752..1237901 (+) 1150 Protein_1118 cysteine desulfurase family protein -
  JM183_RS05805 (NCTC12218_01234) mnmA 1237898..1239010 (+) 1113 WP_126495987.1 tRNA 2-thiouridine(34) synthase MnmA -
  JM183_RS05810 (NCTC12218_01235) - 1239022..1239696 (+) 675 WP_187364098.1 tetratricopeptide repeat protein -
  JM183_RS05815 (NCTC12218_01236) recD2 1239699..1242092 (+) 2394 WP_126495986.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JM183_RS05820 (NCTC12218_01238) alaS 1242336..1244966 (+) 2631 WP_016425250.1 alanine--tRNA ligase -
  JM183_RS05825 (NCTC12218_01239) - 1245029..1245301 (+) 273 WP_016425249.1 IreB family regulatory phosphoprotein -
  JM183_RS05830 (NCTC12218_01240) ruvX 1245294..1245722 (+) 429 WP_016425248.1 Holliday junction resolvase RuvX -
  JM183_RS05835 (NCTC12218_01241) - 1245736..1246053 (+) 318 WP_016425247.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 90671.29 Da        Isoelectric Point: 4.6218

>NTDB_id=1134908 JM183_RS05815 WP_126495986.1 1239699..1242092(+) (recD2) [Staphylococcus schleiferi strain NCTC12218]
MDNPTLFDQTYVKGTVEMILFQNNENYYTVLKVDVQDSNGDFDDMVTVVGYFPNMVEDETYLFKGSVVQHPKYGKQLKAE
TFQKEIPQTKDAVIAYLSSDLFKGIGKKTAELIVETIGENAINEILKDNQVIEKVPKLSKKKQEQIVQQIITNQESEQVM
IRLNELGFGSKLAMDIYKFYQHETLNVLDQNPYQLVYDIKGVGFQKADQLAQQLGIHPNHPDRLKAGLLFLVEETCIKQG
HTYLPQEALINETIQLLSKNEGEDIRYEAIEDIMVQLTEEKKLIEVDHMIAIPSLYYSEIKSTQNLFRVYSHNEALTQFE
RSDIQLHIGEIEEMNEVHYATSQKEALECAINHKVMLLTGGPGTGKTTVIKGIVQLYSEIHGVSLDYDDYHDNDYPIVLA
APTGRASKRLHESTGLEAMTIHRLIGWNQETKPDDILDNEINAKLIIIDEMSMVDTWLFHQFMAAVPLDAQIIFVGDEDQ
LSSVGPGQVFKDLIDSNVLPRINLTEVYRQQEGSSIIELAHKMKLGEPVDITQRFHDRSFIPCSTEQIPDVVEKVVNNAV
QKGYTMADIQVLAPMYRGNAGIKRLNQILQSILNPVQDKSKREIVFGDVIYRKGDKVLQLINRPNDNVFNGDIGIIVGIF
WAKENALNKDVVVVDYDGNEITYMKSDLTELTHAYCTSIHKAQGSEFPIVLMPIVKQYYRMLQKPILYTGLTRAKQSLVF
LGDSEAFNMGLATEGKARLTQLHSFLTQYFNNDTEEYNQDNQEDLPIELTEATMFKINPMINMGEVTPYDFLEIDKA

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=1134908 JM183_RS05815 WP_126495986.1 1239699..1242092(+) (recD2) [Staphylococcus schleiferi strain NCTC12218]
ATGGATAATCCAACACTGTTTGATCAAACCTATGTAAAAGGGACAGTTGAAATGATATTGTTCCAAAATAACGAAAACTA
CTATACAGTGCTGAAAGTCGATGTACAAGATTCAAATGGCGACTTCGATGACATGGTCACAGTCGTTGGATATTTTCCAA
ATATGGTCGAAGATGAAACGTATTTATTTAAAGGAAGCGTTGTCCAACATCCAAAGTATGGTAAACAGTTAAAAGCTGAA
ACTTTCCAGAAAGAAATTCCACAAACTAAAGATGCGGTAATTGCATATTTATCAAGCGACTTATTCAAAGGTATTGGTAA
AAAAACAGCAGAACTGATTGTCGAAACAATCGGAGAAAATGCAATTAATGAAATATTGAAAGATAATCAAGTCATCGAAA
AGGTTCCAAAACTTTCTAAAAAGAAGCAAGAACAAATTGTGCAGCAAATTATTACCAATCAAGAAAGTGAACAAGTGATG
ATACGTCTCAATGAATTAGGATTTGGATCAAAATTAGCGATGGATATTTATAAATTTTATCAACATGAAACGCTTAATGT
ACTAGATCAAAATCCTTATCAATTGGTTTACGATATCAAGGGAGTTGGTTTTCAAAAAGCGGATCAACTTGCACAGCAAT
TAGGCATTCATCCGAATCATCCTGATCGTCTAAAAGCCGGGCTATTATTTTTAGTTGAAGAAACTTGTATTAAACAAGGG
CATACGTACTTACCACAAGAGGCGCTTATCAATGAGACCATACAACTTCTTTCTAAAAATGAGGGTGAAGACATTCGTTA
TGAAGCCATTGAAGACATCATGGTTCAATTGACTGAAGAAAAAAAGTTAATAGAAGTTGATCACATGATTGCCATACCAA
GTCTATATTATTCTGAAATTAAAAGCACACAAAATTTATTCAGAGTTTATAGTCATAATGAAGCACTGACGCAATTTGAA
CGTTCAGATATTCAACTGCATATTGGTGAAATCGAAGAGATGAATGAAGTCCATTATGCTACCTCTCAAAAAGAAGCGTT
AGAATGTGCAATCAATCATAAAGTTATGTTATTAACTGGTGGTCCGGGAACAGGGAAAACAACGGTTATTAAAGGTATCG
TTCAACTTTACTCAGAGATTCATGGTGTGTCTCTTGATTATGATGATTACCATGATAACGACTATCCAATTGTTTTAGCA
GCACCAACGGGACGTGCGTCGAAACGATTGCATGAATCAACAGGCTTAGAAGCCATGACGATACATCGTTTAATAGGTTG
GAATCAAGAAACGAAGCCGGATGATATTTTGGATAATGAAATTAATGCCAAACTAATTATTATAGATGAGATGTCTATGG
TGGATACGTGGTTATTCCATCAATTTATGGCTGCCGTGCCGTTAGATGCACAAATCATTTTCGTTGGGGATGAAGACCAG
TTATCATCCGTTGGTCCGGGGCAGGTTTTTAAAGACCTTATCGATTCGAATGTGCTACCTAGAATTAATTTAACTGAAGT
ATACAGACAACAAGAGGGTTCAAGTATTATAGAACTTGCACACAAAATGAAACTAGGTGAGCCTGTTGATATTACCCAGC
GTTTCCATGATCGTTCTTTTATACCCTGTAGTACCGAACAAATTCCTGACGTCGTTGAAAAGGTTGTAAATAATGCAGTA
CAAAAAGGTTATACGATGGCTGACATTCAAGTTTTAGCACCTATGTATAGAGGGAACGCTGGTATTAAAAGATTAAATCA
GATTTTACAATCCATTCTTAATCCAGTTCAAGATAAGTCTAAGCGAGAAATTGTATTTGGTGATGTGATTTATCGTAAAG
GCGATAAAGTATTACAACTCATCAACAGACCGAACGACAATGTTTTTAATGGTGACATTGGCATCATTGTCGGCATTTTT
TGGGCGAAAGAAAATGCCCTTAACAAAGATGTCGTTGTCGTAGATTATGACGGTAATGAAATCACTTATATGAAATCAGA
TTTAACAGAACTTACACATGCTTATTGTACCTCTATTCATAAAGCGCAAGGCTCAGAATTTCCGATTGTTCTTATGCCCA
TCGTCAAACAATATTATCGAATGCTTCAAAAGCCGATTCTTTATACGGGATTGACACGGGCTAAACAATCTCTTGTATTT
TTAGGTGATTCAGAAGCTTTCAATATGGGGCTAGCCACAGAAGGTAAGGCACGTTTAACACAATTACATTCATTTTTAAC
GCAATATTTTAATAATGACACTGAAGAATATAATCAAGACAATCAAGAGGACTTACCAATCGAATTGACCGAAGCAACCA
TGTTTAAAATCAATCCTATGATTAATATGGGTGAAGTCACACCATACGATTTTCTTGAAATTGACAAAGCTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.439

100

0.516

Multiple sequence alignment