Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NMK36_RS22640 Genome accession   NZ_LR882967
Coordinates   5249505..5249873 (-) Length   122 a.a.
NCBI ID   WP_072718373.1    Uniprot ID   A0A9W4DCT3
Organism   Planktothrix pseudagardhii strain No.713     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5244505..5254873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMK36_RS22625 (NO713_04530) - 5245011..5246192 (-) 1182 WP_222425223.1 HhoA/HhoB/HtrA family serine endopeptidase -
  NMK36_RS22630 (NO713_04531) - 5246481..5246915 (-) 435 WP_072718375.1 Hsp20/alpha crystallin family protein -
  NMK36_RS22635 (NO713_04532) - 5247443..5249311 (+) 1869 WP_072718374.1 chloride channel protein -
  NMK36_RS22640 (NO713_04533) pilH 5249505..5249873 (-) 369 WP_072718373.1 response regulator transcription factor Machinery gene
  NMK36_RS22645 (NO713_04534) ltrA 5250216..5251917 (-) 1702 Protein_4497 group II intron reverse transcriptase/maturase -
  NMK36_RS22650 (NO713_04536) purH 5252837..5254384 (+) 1548 WP_254174681.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13905.31 Da        Isoelectric Point: 6.8625

>NTDB_id=1132967 NMK36_RS22640 WP_072718373.1 5249505..5249873(-) (pilH) [Planktothrix pseudagardhii strain No.713]
MTTVMIVDDSISLREMIADMLRKSGVEVISAGDGMEALEKIEQVKHLDLVVLDIVMPNMNGYELCRHIKKHPKTQNVPVV
MCSSKSEEFDRYWGIKQGADAYISKPFHPQELMSTIKQLLRK

Nucleotide


Download         Length: 369 bp        

>NTDB_id=1132967 NMK36_RS22640 WP_072718373.1 5249505..5249873(-) (pilH) [Planktothrix pseudagardhii strain No.713]
ATGACTACAGTCATGATTGTCGATGATAGCATCTCCCTCCGAGAGATGATTGCAGATATGTTGCGTAAAAGTGGCGTGGA
GGTAATCTCAGCGGGAGATGGGATGGAAGCCTTAGAAAAAATTGAACAAGTCAAGCATCTGGATTTGGTGGTGTTAGATA
TTGTCATGCCGAATATGAATGGCTATGAACTTTGCCGCCATATTAAAAAACACCCCAAAACCCAGAATGTCCCTGTAGTA
ATGTGTTCGAGTAAAAGCGAGGAATTTGATCGCTATTGGGGAATTAAACAGGGGGCTGATGCTTATATCTCAAAACCCTT
CCATCCCCAAGAACTCATGAGTACAATCAAACAACTTCTACGCAAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

64.754

100

0.648
  pilG Acinetobacter baumannii strain A118

43.478

94.262

0.41
  micA Streptococcus pneumoniae Cp1015

39.344

100

0.393
  vicR Streptococcus mutans UA159

38.525

100

0.385
  chpA Acinetobacter baumannii strain A118

37.607

95.902

0.361

Multiple sequence alignment