Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | LJDFIFNA_RS09050 | Genome accession | NZ_LR822060 |
| Coordinates | 1760679..1761182 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus isolate P3.1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1740610..1765242 | 1760679..1761182 | within | 0 |
Gene organization within MGE regions
Location: 1740610..1765242
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJDFIFNA_RS08910 (BKMNNEJI_01704) | - | 1740610..1740873 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| LJDFIFNA_RS08915 (BKMNNEJI_01705) | - | 1741010..1741582 (-) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| LJDFIFNA_RS08920 (BKMNNEJI_01706) | - | 1741763..1742131 (-) | 369 | WP_000849163.1 | YxeA family protein | - |
| LJDFIFNA_RS08925 (BKMNNEJI_01707) | selX | 1742500..1743111 (-) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| LJDFIFNA_RS08930 (H0509_RS08930) | - | 1743317..1744030 (+) | 714 | Protein_1725 | tyrosine-type recombinase/integrase | - |
| LJDFIFNA_RS08935 (BKMNNEJI_01708) | - | 1744069..1745007 (+) | 939 | WP_001817700.1 | Abi family protein | - |
| LJDFIFNA_RS15150 | - | 1745810..1745989 (-) | 180 | WP_000797954.1 | hypothetical protein | - |
| LJDFIFNA_RS08940 (BKMNNEJI_01709) | - | 1746005..1746517 (-) | 513 | WP_000813311.1 | hypothetical protein | - |
| LJDFIFNA_RS08945 (BKMNNEJI_01710) | - | 1746635..1747036 (-) | 402 | WP_000683457.1 | hypothetical protein | - |
| LJDFIFNA_RS08950 (BKMNNEJI_01711) | - | 1747214..1748182 (-) | 969 | WP_000801980.1 | Abi family protein | - |
| LJDFIFNA_RS08955 (BKMNNEJI_01712) | - | 1748459..1749028 (-) | 570 | WP_001293071.1 | terminase small subunit | - |
| LJDFIFNA_RS08960 (H0509_RS08960) | - | 1749025..1749237 (-) | 213 | WP_001656917.1 | hypothetical protein | - |
| LJDFIFNA_RS08965 (BKMNNEJI_01714) | - | 1749369..1749896 (-) | 528 | WP_000771361.1 | spore coat protein | - |
| LJDFIFNA_RS08970 (BKMNNEJI_01715) | - | 1749949..1750602 (-) | 654 | WP_000214170.1 | hypothetical protein | - |
| LJDFIFNA_RS08975 (BKMNNEJI_01716) | - | 1750633..1750977 (-) | 345 | WP_001288442.1 | hypothetical protein | - |
| LJDFIFNA_RS08980 (BKMNNEJI_01717) | - | 1751685..1752326 (-) | 642 | WP_001019762.1 | hypothetical protein | - |
| LJDFIFNA_RS08985 (BKMNNEJI_01718) | - | 1752323..1752703 (-) | 381 | WP_000356942.1 | hypothetical protein | - |
| LJDFIFNA_RS08990 (BKMNNEJI_01719) | - | 1753013..1754722 (-) | 1710 | WP_000447468.1 | DUF927 domain-containing protein | - |
| LJDFIFNA_RS08995 (BKMNNEJI_01720) | - | 1754736..1755605 (-) | 870 | WP_001002709.1 | primase alpha helix C-terminal domain-containing protein | - |
| LJDFIFNA_RS09000 (BKMNNEJI_01721) | tscT | 1755670..1755996 (-) | 327 | WP_001103967.1 | type II toxin-antitoxin system toxin TscT | - |
| LJDFIFNA_RS09005 (BKMNNEJI_01722) | - | 1755997..1756380 (-) | 384 | WP_000403837.1 | hypothetical protein | - |
| LJDFIFNA_RS09010 (BKMNNEJI_01723) | - | 1756382..1756585 (-) | 204 | WP_001231376.1 | hypothetical protein | - |
| LJDFIFNA_RS09015 (BKMNNEJI_01724) | - | 1756552..1756725 (-) | 174 | WP_000784892.1 | hypothetical protein | - |
| LJDFIFNA_RS09020 (BKMNNEJI_01725) | - | 1756737..1757009 (-) | 273 | WP_001138305.1 | helix-turn-helix domain-containing protein | - |
| LJDFIFNA_RS09025 (BKMNNEJI_01726) | - | 1757010..1757174 (-) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| LJDFIFNA_RS09030 (BKMNNEJI_01727) | - | 1757323..1757946 (+) | 624 | WP_000230361.1 | helix-turn-helix domain-containing protein | - |
| LJDFIFNA_RS09035 (BKMNNEJI_01728) | - | 1758107..1759321 (+) | 1215 | WP_000270135.1 | tyrosine-type recombinase/integrase | - |
| LJDFIFNA_RS09040 (BKMNNEJI_01729) | - | 1759434..1760153 (+) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LJDFIFNA_RS09045 (BKMNNEJI_01730) | rpsR | 1760385..1760627 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| LJDFIFNA_RS09050 (BKMNNEJI_01731) | ssbA | 1760679..1761182 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| LJDFIFNA_RS09055 (BKMNNEJI_01732) | rpsF | 1761203..1761499 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| LJDFIFNA_RS09060 (BKMNNEJI_01733) | - | 1761743..1761934 (+) | 192 | WP_001052484.1 | hypothetical protein | - |
| LJDFIFNA_RS09065 (BKMNNEJI_01734) | ychF | 1762020..1763117 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| LJDFIFNA_RS09070 (BKMNNEJI_01735) | - | 1763129..1763332 (-) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| LJDFIFNA_RS09075 (BKMNNEJI_01736) | - | 1763362..1764243 (-) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| LJDFIFNA_RS09080 (BKMNNEJI_01737) | - | 1764397..1765242 (-) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=1132245 LJDFIFNA_RS09050 WP_000934799.1 1760679..1761182(-) (ssbA) [Staphylococcus aureus isolate P3.1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=1132245 LJDFIFNA_RS09050 WP_000934799.1 1760679..1761182(-) (ssbA) [Staphylococcus aureus isolate P3.1]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |