Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FXZ10_RS00485 Genome accession   NZ_LR698965
Coordinates   103613..104083 (+) Length   156 a.a.
NCBI ID   WP_052649571.1    Uniprot ID   A0A098EHA6
Organism   Planococcus massiliensis isolate MGYG-HGUT-01482     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 98613..109083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXZ10_RS00450 - 98930..99643 (+) 714 WP_052649566.1 DUF554 domain-containing protein -
  FXZ10_RS00455 - 99775..100611 (+) 837 WP_407674794.1 mechanosensitive ion channel family protein -
  FXZ10_RS00460 - 100630..100833 (+) 204 WP_052649567.1 DUF951 domain-containing protein -
  FXZ10_RS00465 ychF 100947..102047 (+) 1101 WP_052654269.1 redox-regulated ATPase YchF -
  FXZ10_RS00470 - 102159..102530 (+) 372 WP_052649568.1 gamma-glutamylcyclotransferase -
  FXZ10_RS00475 - 102548..103105 (-) 558 WP_052649569.1 DUF3267 domain-containing protein -
  FXZ10_RS00480 rpsF 103282..103569 (+) 288 WP_052649570.1 30S ribosomal protein S6 -
  FXZ10_RS00485 ssbA 103613..104083 (+) 471 WP_052649571.1 single-stranded DNA-binding protein Machinery gene
  FXZ10_RS00490 rpsR 104135..104371 (+) 237 WP_052649572.1 30S ribosomal protein S18 -
  FXZ10_RS00495 - 104623..105573 (+) 951 WP_052649573.1 YybS family protein -
  FXZ10_RS00500 - 105587..107563 (+) 1977 WP_052649574.1 DHH family phosphoesterase -
  FXZ10_RS00505 rplI 107560..108009 (+) 450 WP_052649575.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17044.68 Da        Isoelectric Point: 5.2339

>NTDB_id=1128693 FXZ10_RS00485 WP_052649571.1 103613..104083(+) (ssbA) [Planococcus massiliensis isolate MGYG-HGUT-01482]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGEKETDFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKNSGAGADRSQGQPSYQQNQSPSQQNHTRVDQDPFSSGSGPIEVSDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1128693 FXZ10_RS00485 WP_052649571.1 103613..104083(+) (ssbA) [Planococcus massiliensis isolate MGYG-HGUT-01482]
ATGATTAACCGAGTTGTTTTAGTCGGAAGACTGACAAAAGATCCTGACCTTCGCTATACGCCAAGCGGAGCGGCAGTCGC
TCGCTTTACACTGGCTGTAAACCGGACGTTCTCCAATGCGCAAGGTGAGAAGGAAACGGATTTTATCAATTGTACGGTTT
GGCGCAAGCAAGCTGAAAACACAGCAAACTTCCTGAAAAAAGGAAGCCTCGCTGGTGTAGAAGGCCGCATTCAAACTGGC
AGCTACGAGGGACAAGACGGAAAACGCGTTTACACGACTGAAGTAGTAGCAGACAGTGTTCAATTCCTTGAACCTAAAAA
TTCTGGTGCTGGTGCAGATCGTTCACAAGGGCAGCCATCTTATCAGCAGAACCAATCGCCAAGTCAACAAAACCATACCC
GTGTAGACCAAGACCCATTCTCAAGCGGCAGCGGCCCGATCGAAGTATCGGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098EHA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.884

100

0.66
  ssb Latilactobacillus sakei subsp. sakei 23K

53.488

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.487

72.436

0.474
  ssb Neisseria gonorrhoeae MS11

35.26

100

0.391
  ssb Vibrio cholerae strain A1552

34.286

100

0.385
  ssb Neisseria meningitidis MC58

33.721

100

0.372
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment