Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FGK94_RS04620 Genome accession   NZ_LR590471
Coordinates   1009611..1010099 (-) Length   162 a.a.
NCBI ID   WP_043051946.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11854     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1004611..1015099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK94_RS04605 (NCTC11854_00948) - 1007093..1008037 (+) 945 WP_043025211.1 magnesium transporter CorA family protein -
  FGK94_RS04610 (NCTC11854_00949) - 1008296..1008946 (+) 651 WP_043051947.1 DUF1129 domain-containing protein -
  FGK94_RS04615 (NCTC11854_00950) rpsR 1009213..1009452 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  FGK94_RS04620 (NCTC11854_00951) ssbA 1009611..1010099 (-) 489 WP_043051946.1 single-stranded DNA-binding protein Machinery gene
  FGK94_RS04625 (NCTC11854_00952) rpsF 1010118..1010408 (-) 291 WP_012678504.1 30S ribosomal protein S6 -
  FGK94_RS10350 - 1010588..1010719 (-) 132 WP_269062957.1 hypothetical protein -
  FGK94_RS04630 - 1011470..1011695 (-) 226 Protein_922 HicB family protein -
  FGK94_RS04635 (NCTC11854_00953) mutY 1011784..1012932 (+) 1149 WP_138083012.1 A/G-specific adenine glycosylase -
  FGK94_RS04640 (NCTC11854_00954) - 1013224..1013508 (+) 285 WP_138083014.1 hypothetical protein -
  FGK94_RS04645 (NCTC11854_00955) - 1013728..1014657 (+) 930 WP_138083016.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17864.74 Da        Isoelectric Point: 4.9008

>NTDB_id=1126870 FGK94_RS04620 WP_043051946.1 1009611..1010099(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREANSSGSYVGGFNSSPATNSYSAPAQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1126870 FGK94_RS04620 WP_043051946.1 1009611..1010099(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAAGCGGATTTCATTAACTGTGTGATCT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGTGCCTTGATTGGGATTACGGGACGTATTCAGACCCGC
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAACTCGTCTGGCTCATATGTTGGTGGCTTTAATAGCTCACCGGCAACCAATAGCTATTCAGCGCCTG
CTCAGCAAACACCTAACTTTGGTAGAGATGAAAGTCCATTTGGCGGCTCAAATCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.471

100

0.617
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.955

68.519

0.377

Multiple sequence alignment