Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CJ8421_RS03100 Genome accession   NZ_CP005388
Coordinates   585479..586252 (+) Length   257 a.a.
NCBI ID   WP_002859984.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni CG8421     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 580479..591252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ8421_RS03085 (CJ8421_03085) - 581328..583262 (-) 1935 WP_032592180.1 ribonuclease R family protein -
  CJ8421_RS03090 (CJ8421_03090) ilvC 583381..584403 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  CJ8421_RS03095 (CJ8421_03095) - 584407..585489 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  CJ8421_RS03100 (CJ8421_03100) dprA 585479..586252 (+) 774 WP_002859984.1 DNA-processing protein DprA Machinery gene
  CJ8421_RS03105 (CJ8421_03105) ruvX 586249..586632 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  CJ8421_RS03110 (CJ8421_03110) - 586661..587500 (+) 840 WP_002859985.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJ8421_RS03115 (CJ8421_03115) msrA 587675..588172 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJ8421_RS03120 (CJ8421_03120) ppa 588214..588732 (-) 519 WP_002852138.1 inorganic diphosphatase -
  CJ8421_RS03125 (CJ8421_03125) adk 588742..589320 (-) 579 WP_002859580.1 adenylate kinase -
  CJ8421_RS03130 (CJ8421_03130) aspS 589317..591068 (-) 1752 WP_032592178.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.61 Da        Isoelectric Point: 6.4874

>NTDB_id=112557 CJ8421_RS03100 WP_002859984.1 585479..586252(+) (dprA) [Campylobacter jejuni subsp. jejuni CG8421]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=112557 CJ8421_RS03100 WP_002859984.1 585479..586252(+) (dprA) [Campylobacter jejuni subsp. jejuni CG8421]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment