Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | EL242_RS08485 | Genome accession | NZ_LR134495 |
| Coordinates | 1721016..1721495 (-) | Length | 159 a.a. |
| NCBI ID | WP_126302232.1 | Uniprot ID | A0A448TCU7 |
| Organism | Mannheimia haemolytica strain NCTC10643 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1716016..1726495
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL242_RS08460 (NCTC10643_01680) | yacG | 1716912..1717097 (-) | 186 | WP_126302227.1 | DNA gyrase inhibitor YacG | - |
| EL242_RS08465 (NCTC10643_01681) | coaE | 1717079..1717717 (-) | 639 | WP_126302228.1 | dephospho-CoA kinase | - |
| EL242_RS08470 (NCTC10643_01682) | - | 1717753..1718409 (-) | 657 | WP_126302229.1 | prepilin peptidase | - |
| EL242_RS08475 (NCTC10643_01683) | pilC | 1718412..1719608 (-) | 1197 | WP_126302230.1 | type II secretion system F family protein | Machinery gene |
| EL242_RS08480 (NCTC10643_01684) | pilB | 1719592..1720995 (-) | 1404 | WP_126302231.1 | GspE/PulE family protein | Machinery gene |
| EL242_RS08485 (NCTC10643_01685) | pilA | 1721016..1721495 (-) | 480 | WP_126302232.1 | prepilin peptidase-dependent pilin | Machinery gene |
| EL242_RS08495 (NCTC10643_01686) | radA | 1721676..1723055 (+) | 1380 | WP_126302233.1 | DNA repair protein RadA | - |
| EL242_RS08500 (NCTC10643_01687) | - | 1723110..1723340 (-) | 231 | WP_126302234.1 | YgjV family protein | - |
| EL242_RS08505 (NCTC10643_01688) | - | 1723460..1723954 (-) | 495 | WP_126302235.1 | dihydrofolate reductase | - |
| EL242_RS08510 (NCTC10643_01689) | proB | 1724066..1725157 (+) | 1092 | WP_126302236.1 | glutamate 5-kinase | - |
| EL242_RS08515 (NCTC10643_01690) | - | 1725157..1725921 (+) | 765 | WP_126302237.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 16782.08 Da Isoelectric Point: 8.7964
>NTDB_id=1123269 EL242_RS08485 WP_126302232.1 1721016..1721495(-) (pilA) [Mannheimia haemolytica strain NCTC10643]
MQKIVHLRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLQASASYKSDVEVCIYNSGGLDNCSG
GTNGIQANKTSSNTTKYLNSIAVTKGVITVTGKGSLNGYSYTLTPSFSNNTISWAASCSGSDTSLFPANFCSTTTTPNG
MQKIVHLRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLQASASYKSDVEVCIYNSGGLDNCSG
GTNGIQANKTSSNTTKYLNSIAVTKGVITVTGKGSLNGYSYTLTPSFSNNTISWAASCSGSDTSLFPANFCSTTTTPNG
Nucleotide
Download Length: 480 bp
>NTDB_id=1123269 EL242_RS08485 WP_126302232.1 1721016..1721495(-) (pilA) [Mannheimia haemolytica strain NCTC10643]
ATGCAAAAAATTGTACATCTTCGACCGCTTGGCATTCGCCAACTTCATCGGGCATTTACCCTCATTGAGTTGATGATCGT
GATTGCGATTATTGCCATTCTTGCCACTATTGCGATCCCTTCCTATAACTCATACACCCAAAAGGCGGCGTTATCGGAGT
TATTACAAGCATCTGCTTCGTATAAATCAGACGTTGAAGTCTGTATTTACAACAGTGGCGGGTTGGATAACTGCTCCGGT
GGCACGAATGGGATTCAGGCGAATAAAACCAGCAGTAATACCACTAAATACCTAAATTCGATTGCGGTAACAAAAGGCGT
GATTACAGTAACCGGCAAAGGCTCGCTGAATGGTTATAGCTACACCTTAACACCATCGTTCTCAAATAATACGATTAGCT
GGGCGGCAAGTTGTAGCGGCAGTGATACCAGCCTATTTCCAGCTAATTTCTGTAGCACAACCACTACACCAAACGGCTAA
ATGCAAAAAATTGTACATCTTCGACCGCTTGGCATTCGCCAACTTCATCGGGCATTTACCCTCATTGAGTTGATGATCGT
GATTGCGATTATTGCCATTCTTGCCACTATTGCGATCCCTTCCTATAACTCATACACCCAAAAGGCGGCGTTATCGGAGT
TATTACAAGCATCTGCTTCGTATAAATCAGACGTTGAAGTCTGTATTTACAACAGTGGCGGGTTGGATAACTGCTCCGGT
GGCACGAATGGGATTCAGGCGAATAAAACCAGCAGTAATACCACTAAATACCTAAATTCGATTGCGGTAACAAAAGGCGT
GATTACAGTAACCGGCAAAGGCTCGCTGAATGGTTATAGCTACACCTTAACACCATCGTTCTCAAATAATACGATTAGCT
GGGCGGCAAGTTGTAGCGGCAGTGATACCAGCCTATTTCCAGCTAATTTCTGTAGCACAACCACTACACCAAACGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
66.038 |
100 |
0.66 |
| pilA | Haemophilus influenzae 86-028NP |
54.861 |
90.566 |
0.497 |
| pilA | Haemophilus influenzae Rd KW20 |
53.425 |
91.824 |
0.491 |