Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   VV93_RS04940 Genome accession   NZ_CP009261
Coordinates   1039792..1043196 (+) Length   1134 a.a.
NCBI ID   WP_039553091.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 93U204     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1034792..1048196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV93_RS04915 (VV93_v1c09570) sucC 1034979..1036145 (+) 1167 WP_011078272.1 ADP-forming succinate--CoA ligase subunit beta -
  VV93_RS04920 (VV93_v1c09580) sucD 1036145..1037017 (+) 873 WP_011149794.1 succinate--CoA ligase subunit alpha -
  VV93_RS04925 (VV93_v1c09590) znuB 1037100..1037885 (-) 786 WP_039553087.1 zinc ABC transporter permease subunit ZnuB -
  VV93_RS04930 (VV93_v1c09600) znuC 1037878..1038663 (-) 786 WP_011078269.1 zinc ABC transporter ATP-binding protein ZnuC -
  VV93_RS04935 (VV93_v1c09610) znuA 1038745..1039620 (+) 876 WP_039553089.1 zinc ABC transporter substrate-binding protein ZnuA -
  VV93_RS04940 (VV93_v1c09620) tfoS 1039792..1043196 (+) 3405 WP_039553091.1 AraC family transcriptional regulator Regulator
  VV93_RS04945 (VV93_v1c09630) - 1043983..1044210 (+) 228 WP_039553093.1 FeoA family protein -
  VV93_RS04950 (VV93_v1c09640) feoB 1044210..1046486 (+) 2277 WP_039553095.1 Fe(2+) transporter permease subunit FeoB -
  VV93_RS04955 (VV93_v1c09650) - 1046483..1046713 (+) 231 WP_011078264.1 FeoC-like transcriptional regulator -
  VV93_RS04960 (VV93_v1c09660) - 1046822..1047250 (-) 429 WP_039553096.1 HIT domain-containing protein -

Sequence

Protein


Download         Length: 1134 a.a.        Molecular weight: 126761.42 Da        Isoelectric Point: 5.2778

>NTDB_id=112102 VV93_RS04940 WP_039553091.1 1039792..1043196(+) (tfoS) [Vibrio vulnificus strain 93U204]
MLRILAWLLLAGLTLPFKVLALDGNSAIFYPLPGQEQGTFVAAKNLFVGGDGGLWIHDVHGKVQYFDGNTLLPKRGSLLE
YPSEQVAFHQGSFWTFVANEVFQTYPNQKRQLAFSLNPGAEIRKIGSSDGHIWVSDGINFYDYDIESKELKTYSLLSLYQ
NNQSSYVYINDAKRVLSKWVLGTTSGAYLSQGEQFTHIKASAKHFVAKLYFSPTRRELLVGTLNGAALIDILKPTQKNIM
IGESHVLSMTETNQEYWIGTEHGLYSYSFLTGQVAKVKAAGAQDVSPDNRKIYSLVNDEQGGIWVATNSGILYYSLFGRK
FERLNNITEEKASRFNGNITKIVYASDETIWFKDANNLYRAIGVNKQYSRVRLPIKVNDFALEDGNIWIASEQGLYIYDT
NQYKLRSFDLPSYLKGKEIDFVSVSPQGKVWISSGYRLAAIGVADGRFQDYGDRWIASQNLPARILGLEVDQKVPLIVRT
DHGAYVLENDKIRFERNTQSFGESVDIAEAKDGSLWFAGTHGIYRKDPTEKTLGELALPQENVKPICLVTDASGIWMVSS
IGLSFYNFDGELRKHFGSRSGIMSNEFVEGACAASFGEAQSGSVLVLGSKYGLVFADRDDLMVSKLPEPRVVISQVRIDD
QVANIGQKEWQLPELAYGSAISFGLGVMPNAYGETLYYRLNQEHWQTTEAGQVSFEHLAAGDYLLSVKTSLVAGDSVQVR
FTVLHPWYQTTMAMAIFVLLIVALGGLVVFWRSRYVSVQNRELTALVALKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
NVARSLRQSVDALLSKPSVEPASEYQEHQMRIAMLLEELKSSPSDGIDGYLQNFNVSHIIQSVVDVWEDELNKSGVQVHI
SGESDDYRVAVGQFNLDVIFNSVFASVLKRAYRGQMLDIVIREQNDFVEVSFIDFGQPFSTSTEAEDSAGVESTKVDTEI
EKLPALVEQSGGRLSLFSSAERNKIEILWPKAVESLINDEEPSIFVDSVELSPVTEVSSEAVLSPEQLWLAKVEAMVAEH
YTNPEFGTAMAAKKLYVSERSLQRRFKSASSRTFTDYLTEVRLEKACESLLAGEKVVDVAFASGFNDPSYFSQRFKLYFG
VPPSKFASDALESE

Nucleotide


Download         Length: 3405 bp        

>NTDB_id=112102 VV93_RS04940 WP_039553091.1 1039792..1043196(+) (tfoS) [Vibrio vulnificus strain 93U204]
TTGCTGCGTATTCTTGCCTGGCTTCTACTTGCTGGGCTTACACTACCGTTCAAAGTGCTAGCTTTGGACGGTAACTCTGC
CATATTTTACCCACTGCCTGGACAGGAGCAGGGAACCTTTGTTGCCGCTAAAAATCTCTTTGTTGGTGGTGATGGTGGTT
TGTGGATCCACGACGTGCACGGCAAAGTGCAATATTTCGATGGCAATACCTTGTTGCCGAAACGTGGCAGCCTTCTAGAG
TATCCTTCCGAGCAAGTGGCCTTTCATCAAGGCAGTTTTTGGACTTTTGTCGCGAATGAAGTCTTCCAAACATACCCCAA
TCAGAAGCGTCAGTTAGCGTTCAGCTTAAATCCGGGGGCAGAAATCAGAAAAATTGGCAGCTCAGATGGCCACATTTGGG
TGAGTGATGGCATCAATTTTTATGACTACGATATTGAATCAAAAGAATTAAAAACCTATTCCTTACTCTCGTTGTATCAA
AACAATCAGAGTAGCTACGTCTACATCAATGATGCAAAGCGGGTTTTAAGCAAATGGGTACTCGGTACCACATCGGGAGC
GTACCTATCACAAGGTGAGCAATTTACCCATATCAAAGCGTCAGCGAAGCATTTCGTTGCCAAACTGTACTTTTCTCCGA
CTCGTCGTGAGTTACTGGTGGGGACGCTAAATGGCGCTGCGCTCATTGATATTTTAAAGCCGACTCAAAAAAACATCATG
ATTGGAGAGTCTCATGTGCTTTCGATGACAGAAACCAATCAAGAATATTGGATTGGCACGGAACATGGTCTGTACAGTTA
CTCGTTTTTAACTGGACAAGTGGCCAAAGTGAAAGCGGCAGGTGCGCAAGATGTCTCTCCTGATAATCGAAAAATTTACT
CGTTGGTGAATGATGAACAAGGGGGTATTTGGGTTGCGACGAACAGTGGCATTCTCTACTACTCTCTGTTTGGCCGAAAA
TTTGAACGTCTTAATAACATCACCGAAGAAAAAGCCAGCCGTTTTAATGGCAATATCACCAAAATTGTCTATGCATCAGA
TGAAACGATTTGGTTTAAAGATGCAAACAATCTTTACCGGGCCATTGGGGTTAATAAACAATACAGCCGTGTGCGTTTGC
CGATAAAGGTGAATGACTTTGCACTTGAAGATGGCAACATCTGGATTGCTTCCGAGCAAGGTCTGTATATATACGACACG
AATCAGTACAAACTTCGATCGTTCGATTTACCAAGTTACCTTAAAGGTAAAGAGATTGATTTTGTTTCGGTCAGCCCTCA
AGGCAAGGTTTGGATTAGTTCGGGTTATCGATTAGCTGCCATTGGCGTTGCCGATGGACGCTTCCAAGATTATGGCGATC
GGTGGATTGCCAGCCAAAATTTGCCCGCTCGAATTTTGGGTCTAGAAGTGGATCAAAAAGTCCCGTTAATCGTAAGAACC
GATCACGGGGCCTATGTGCTAGAAAACGACAAGATCCGTTTTGAGCGAAACACGCAGTCTTTTGGTGAAAGTGTCGATAT
TGCAGAAGCGAAAGATGGGTCGCTATGGTTTGCAGGGACTCACGGCATCTATCGTAAGGATCCCACAGAAAAAACGTTAG
GAGAGCTGGCACTTCCTCAGGAAAACGTGAAGCCTATTTGCTTAGTCACCGATGCTAGCGGCATTTGGATGGTGAGTTCA
ATTGGTCTCAGTTTTTACAATTTTGACGGAGAGCTGCGTAAGCACTTTGGGTCTCGTTCGGGCATTATGAGTAATGAGTT
CGTTGAAGGGGCATGTGCGGCTTCATTTGGAGAAGCGCAATCCGGCTCGGTGTTAGTACTGGGTTCAAAATATGGCCTGG
TATTTGCGGACCGTGATGACCTAATGGTATCCAAACTACCTGAACCTAGAGTGGTCATCAGCCAAGTTCGTATTGATGAT
CAGGTTGCAAATATCGGGCAAAAAGAGTGGCAATTGCCCGAGTTAGCGTATGGTTCCGCGATTAGTTTTGGCCTCGGCGT
GATGCCCAATGCTTACGGTGAAACGCTCTATTACCGTTTAAACCAGGAACACTGGCAAACCACAGAAGCAGGACAAGTCT
CTTTTGAACACCTTGCGGCAGGTGATTACTTGTTAAGTGTTAAAACCAGCCTAGTCGCAGGGGATTCCGTGCAAGTTCGC
TTTACGGTGTTACACCCGTGGTATCAAACTACGATGGCGATGGCAATTTTTGTCTTGCTCATCGTAGCGCTGGGCGGCTT
AGTTGTTTTCTGGCGTTCTCGCTACGTCAGTGTTCAAAACCGTGAGTTAACTGCACTGGTGGCATTGAAGACCAATCAAT
TGCGTCATCAGAGTCGAGTGTTGCTCACCAGTAACCAACAACTTCGTAAACAGATCCAAGTTAGAAATTTGCTGGTTGAC
AATGTTGCCCGTTCATTACGTCAAAGTGTGGATGCATTACTAAGCAAGCCATCGGTTGAACCTGCTTCAGAATATCAGGA
ACATCAAATGCGCATAGCAATGCTTTTGGAAGAGCTAAAAAGCTCGCCCAGCGATGGAATTGACGGGTATCTGCAAAACT
TTAACGTTAGCCATATCATTCAGTCGGTCGTTGACGTTTGGGAAGATGAACTCAATAAAAGCGGTGTTCAGGTGCACATT
TCTGGCGAATCGGACGACTATCGTGTCGCGGTAGGGCAATTTAATCTGGATGTCATTTTTAATAGTGTTTTTGCAAGTGT
GTTGAAACGCGCCTATCGTGGCCAAATGCTCGATATTGTGATCAGAGAGCAAAACGATTTTGTTGAAGTGTCGTTTATTG
ATTTTGGCCAGCCGTTTAGTACGAGCACGGAAGCCGAGGATAGCGCTGGTGTTGAGTCGACAAAAGTCGATACTGAAATT
GAGAAGCTACCTGCTTTAGTTGAACAAAGTGGCGGACGCTTAAGCTTGTTCAGTAGCGCTGAGCGAAACAAGATCGAAAT
ACTGTGGCCAAAAGCGGTTGAATCTCTGATAAATGATGAAGAGCCAAGCATCTTTGTTGATTCAGTCGAGCTGTCTCCAG
TTACGGAAGTCTCATCCGAAGCTGTTCTGTCGCCAGAGCAGCTATGGTTGGCGAAGGTCGAGGCTATGGTGGCAGAGCAT
TATACAAACCCAGAATTTGGCACGGCAATGGCGGCCAAAAAGCTTTATGTTTCGGAGCGCAGCTTACAGCGACGGTTTAA
ATCAGCGAGCTCTCGTACATTTACGGATTACCTCACGGAAGTACGTTTAGAAAAAGCATGCGAAAGTTTGTTGGCTGGTG
AAAAAGTGGTCGATGTGGCTTTCGCATCGGGATTTAATGATCCTTCTTACTTTAGTCAACGTTTTAAACTGTACTTTGGT
GTGCCCCCTTCAAAATTTGCCAGTGACGCTCTAGAGTCCGAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1052-1126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.529

100

0.399

Multiple sequence alignment