Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EL119_RS00150 | Genome accession | NZ_LR134305 |
| Coordinates | 21713..22132 (+) | Length | 139 a.a. |
| NCBI ID | WP_000934796.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NCTC1803 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 14062..58985 | 21713..22132 | within | 0 |
Gene organization within MGE regions
Location: 14062..58985
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL119_RS00070 (NCTC1803_00019) | - | 14062..15267 (-) | 1206 | WP_000264756.1 | tyrosine-type recombinase/integrase | - |
| EL119_RS00075 (NCTC1803_00020) | - | 15370..16020 (-) | 651 | WP_001108426.1 | CPBP family intramembrane glutamic endopeptidase | - |
| EL119_RS14745 | - | 16163..16447 (-) | 285 | Protein_14 | toxin | - |
| EL119_RS00085 (NCTC1803_00021) | - | 16493..16927 (-) | 435 | WP_000755716.1 | hypothetical protein | - |
| EL119_RS00090 (NCTC1803_00022) | - | 16945..17406 (-) | 462 | WP_000524999.1 | ImmA/IrrE family metallo-endopeptidase | - |
| EL119_RS00095 (NCTC1803_00023) | - | 17419..17748 (-) | 330 | WP_000429766.1 | helix-turn-helix domain-containing protein | - |
| EL119_RS00100 (NCTC1803_00024) | - | 17909..18100 (+) | 192 | WP_001115060.1 | helix-turn-helix transcriptional regulator | - |
| EL119_RS14630 (NCTC1803_00025) | - | 18188..18364 (+) | 177 | WP_001001356.1 | hypothetical protein | - |
| EL119_RS00105 (NCTC1803_00026) | - | 18361..18591 (-) | 231 | WP_000549547.1 | hypothetical protein | - |
| EL119_RS00110 (NCTC1803_00027) | - | 18648..19400 (+) | 753 | WP_001148596.1 | phage antirepressor KilAC domain-containing protein | - |
| EL119_RS00115 (NCTC1803_00028) | - | 19416..19613 (+) | 198 | WP_001202628.1 | hypothetical protein | - |
| EL119_RS14750 | - | 19625..19756 (+) | 132 | Protein_23 | hypothetical protein | - |
| EL119_RS00120 (NCTC1803_00029) | - | 19759..20022 (+) | 264 | WP_001124184.1 | helix-turn-helix domain-containing protein | - |
| EL119_RS00125 (NCTC1803_00030) | - | 20035..20196 (+) | 162 | WP_001285948.1 | DUF1270 domain-containing protein | - |
| EL119_RS00130 (NCTC1803_00031) | - | 20299..20601 (+) | 303 | WP_000165372.1 | DUF2482 family protein | - |
| EL119_RS00135 (NCTC1803_00032) | - | 20606..20866 (+) | 261 | WP_000291499.1 | DUF1108 family protein | - |
| EL119_RS00140 (NCTC1803_00033) | - | 20876..21097 (+) | 222 | WP_000815403.1 | DUF2483 family protein | - |
| EL119_RS00145 (NCTC1803_00034) | - | 21090..21713 (+) | 624 | WP_000139727.1 | DUF1071 domain-containing protein | - |
| EL119_RS00150 (NCTC1803_00035) | ssbA | 21713..22132 (+) | 420 | WP_000934796.1 | single-stranded DNA-binding protein | Machinery gene |
| EL119_RS00155 (NCTC1803_00036) | - | 22146..22841 (+) | 696 | WP_001124448.1 | putative HNHc nuclease | - |
| EL119_RS00160 (NCTC1803_00037) | - | 22813..23613 (+) | 801 | WP_000504977.1 | phage replisome organizer N-terminal domain-containing protein | - |
| EL119_RS00165 (NCTC1803_00038) | - | 23613..23969 (+) | 357 | WP_001132243.1 | hypothetical protein | - |
| EL119_RS00170 (NCTC1803_00039) | - | 23966..25207 (+) | 1242 | WP_031926470.1 | DnaB helicase C-terminal domain-containing protein | - |
| EL119_RS00175 (NCTC1803_00040) | - | 25204..25419 (+) | 216 | WP_061731561.1 | hypothetical protein | - |
| EL119_RS00180 (NCTC1803_00041) | - | 25423..25644 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| EL119_RS00185 (NCTC1803_00042) | - | 25654..26058 (+) | 405 | WP_000049798.1 | DUF1064 domain-containing protein | - |
| EL119_RS00190 (NCTC1803_00043) | - | 26063..26248 (+) | 186 | WP_001187244.1 | DUF3113 family protein | - |
| EL119_RS00195 (NCTC1803_00044) | - | 26249..26617 (+) | 369 | WP_015978336.1 | SA1788 family PVL leukocidin-associated protein | - |
| EL119_RS00200 (NCTC1803_00045) | - | 26621..26863 (+) | 243 | WP_065315858.1 | phi PVL orf 51-like protein | - |
| EL119_RS00205 (NCTC1803_00046) | - | 26877..27287 (+) | 411 | WP_000695751.1 | DUF4388 domain-containing protein | - |
| EL119_RS00210 (NCTC1803_00047) | - | 27287..27562 (+) | 276 | WP_000399884.1 | hypothetical protein | - |
| EL119_RS00215 (NCTC1803_00048) | - | 27555..27803 (+) | 249 | WP_001065080.1 | DUF1024 family protein | - |
| EL119_RS00220 (NCTC1803_00049) | - | 27796..28332 (+) | 537 | WP_000185699.1 | dUTPase | - |
| EL119_RS00225 (NCTC1803_00050) | - | 28369..28653 (+) | 285 | WP_000154474.1 | hypothetical protein | - |
| EL119_RS00235 (NCTC1803_00052) | - | 28873..29079 (+) | 207 | WP_000195824.1 | DUF1381 domain-containing protein | - |
| EL119_RS00240 (NCTC1803_00053) | rinB | 29076..29228 (+) | 153 | WP_000595213.1 | transcriptional activator RinB | - |
| EL119_RS00245 (NCTC1803_00054) | - | 29296..29496 (+) | 201 | WP_000265259.1 | DUF1514 family protein | - |
| EL119_RS14635 (NCTC1803_00055) | - | 29545..31992 (+) | 2448 | WP_000884863.1 | virulence-associated E family protein | - |
| EL119_RS00255 | - | 32101..32199 (-) | 99 | WP_078061081.1 | hypothetical protein | - |
| EL119_RS00260 (NCTC1803_00056) | - | 32333..32623 (+) | 291 | WP_000665203.1 | VRR-NUC domain-containing protein | - |
| EL119_RS00265 (NCTC1803_00057) | - | 32604..33971 (+) | 1368 | WP_014532555.1 | SNF2-related protein | - |
| EL119_RS00270 (NCTC1803_00058) | - | 33984..34421 (+) | 438 | WP_000535920.1 | transcriptional regulator | - |
| EL119_RS00275 (NCTC1803_00059) | - | 34578..34892 (+) | 315 | WP_000160694.1 | HNH endonuclease | - |
| EL119_RS00280 (NCTC1803_00060) | - | 35020..35325 (+) | 306 | WP_000778933.1 | P27 family phage terminase small subunit | - |
| EL119_RS00285 (NCTC1803_00061) | - | 35315..37006 (+) | 1692 | WP_000153546.1 | terminase large subunit | - |
| EL119_RS00290 (NCTC1803_00062) | - | 37011..38249 (+) | 1239 | WP_065315609.1 | phage portal protein | - |
| EL119_RS00295 (NCTC1803_00063) | - | 38233..39006 (+) | 774 | WP_000036980.1 | head maturation protease, ClpP-related | - |
| EL119_RS00300 (NCTC1803_00064) | - | 39018..40181 (+) | 1164 | WP_001142731.1 | phage major capsid protein | - |
| EL119_RS00305 (NCTC1803_00065) | - | 40250..40528 (+) | 279 | WP_000050976.1 | head-tail connector protein | - |
| EL119_RS00310 (NCTC1803_00066) | - | 40540..40872 (+) | 333 | WP_000395496.1 | hypothetical protein | - |
| EL119_RS00315 (NCTC1803_00067) | - | 40869..41270 (+) | 402 | WP_000110017.1 | hypothetical protein | - |
| EL119_RS00320 (NCTC1803_00068) | - | 41271..41666 (+) | 396 | WP_001023807.1 | DUF3168 domain-containing protein | - |
| EL119_RS00325 (NCTC1803_00069) | - | 41701..42342 (+) | 642 | WP_000807538.1 | major tail protein | - |
| EL119_RS00330 (NCTC1803_00070) | - | 42434..42889 (+) | 456 | WP_000169134.1 | Ig-like domain-containing protein | - |
| EL119_RS00335 (NCTC1803_00071) | gpG | 42916..43266 (+) | 351 | WP_000589167.1 | phage tail assembly chaperone G | - |
| EL119_RS00340 (NCTC1803_00072) | - | 43308..43466 (+) | 159 | WP_000438833.1 | hypothetical protein | - |
| EL119_RS00345 | - | 43480..49679 (+) | 6200 | Protein_68 | phage tail tape measure protein | - |
| EL119_RS00350 (NCTC1803_00075) | - | 49679..50503 (+) | 825 | WP_001190535.1 | phage tail family protein | - |
| EL119_RS00355 (NCTC1803_00076) | - | 50512..52095 (+) | 1584 | WP_000384457.1 | prophage endopeptidase tail family protein | - |
| EL119_RS00360 (NCTC1803_00077) | - | 52095..52385 (+) | 291 | WP_000179860.1 | hypothetical protein | - |
| EL119_RS00365 (NCTC1803_00078) | - | 52401..54311 (+) | 1911 | WP_000429563.1 | hypothetical protein | - |
| EL119_RS00370 (NCTC1803_00079) | - | 54311..55777 (+) | 1467 | WP_000067157.1 | BppU family phage baseplate upper protein | - |
| EL119_RS00375 (NCTC1803_00080) | - | 55777..56166 (+) | 390 | WP_001166604.1 | DUF2977 domain-containing protein | - |
| EL119_RS00380 (NCTC1803_00081) | - | 56159..56323 (+) | 165 | WP_000916020.1 | XkdX family protein | - |
| EL119_RS00385 (NCTC1803_00082) | - | 56369..56668 (+) | 300 | WP_000466773.1 | DUF2951 family protein | - |
| EL119_RS14755 | - | 56902..57009 (+) | 108 | WP_000255429.1 | putative holin-like toxin | - |
| EL119_RS00395 | - | 57056..57166 (-) | 111 | WP_070003492.1 | hypothetical protein | - |
| EL119_RS00400 (NCTC1803_00084) | - | 57217..57519 (+) | 303 | WP_000448764.1 | phage holin | - |
| EL119_RS00405 (NCTC1803_00085) | - | 57531..58985 (+) | 1455 | WP_000930278.1 | N-acetylmuramoyl-L-alanine amidase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 15606.24 Da Isoelectric Point: 7.0171
>NTDB_id=1120800 EL119_RS00150 WP_000934796.1 21713..22132(+) (ssbA) [Staphylococcus aureus strain NCTC1803]
MLNRVVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKEGRRVFVTEVVADSVQFLEPKNNNKQNNQQHNGQTQTGNNPFDNTEEDFSDLPF
MLNRVVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKEGRRVFVTEVVADSVQFLEPKNNNKQNNQQHNGQTQTGNNPFDNTEEDFSDLPF
Nucleotide
Download Length: 420 bp
>NTDB_id=1120800 EL119_RS00150 WP_000934796.1 21713..22132(+) (ssbA) [Staphylococcus aureus strain NCTC1803]
ATGTTAAACAGAGTAGTTTTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGTACACCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCGTTGGCAGGTGTAGACGGACGACTACAAACACGC
AGTTACGATAACAAAGAAGGGCGACGTGTATTTGTGACAGAAGTAGTAGCGGACAGCGTTCAATTCTTAGAACCGAAGAA
TAACAACAAACAGAATAACCAACAACACAACGGACAAACTCAAACTGGTAATAATCCGTTCGACAATACCGAAGAAGACT
TTTCTGACTTACCGTTCTGA
ATGTTAAACAGAGTAGTTTTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGTACACCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCGTTGGCAGGTGTAGACGGACGACTACAAACACGC
AGTTACGATAACAAAGAAGGGCGACGTGTATTTGTGACAGAAGTAGTAGCGGACAGCGTTCAATTCTTAGAACCGAAGAA
TAACAACAAACAGAATAACCAACAACACAACGGACAAACTCAAACTGGTAATAATCCGTTCGACAATACCGAAGAAGACT
TTTCTGACTTACCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
80.374 |
76.978 |
0.619 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.947 |
100 |
0.59 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.091 |
79.137 |
0.468 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.288 |
100 |
0.403 |
| ssbA | Streptococcus mutans UA159 |
45.378 |
85.612 |
0.388 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
49.057 |
76.259 |
0.374 |