Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACOCJD_RS02090 Genome accession   NZ_CP184567
Coordinates   386923..387609 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBTW2018008     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 381923..392609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOCJD_RS02055 (ACOCJD_02055) yqeH 382450..383550 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  ACOCJD_RS02060 (ACOCJD_02060) aroE 383564..384370 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  ACOCJD_RS02065 (ACOCJD_02065) yhbY 384374..384664 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACOCJD_RS02070 (ACOCJD_02070) nadD 384667..385236 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACOCJD_RS02075 (ACOCJD_02075) yqeK 385226..385810 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACOCJD_RS02080 (ACOCJD_02080) rsfS 385811..386164 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACOCJD_RS02085 (ACOCJD_02085) - 386167..386883 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACOCJD_RS02090 (ACOCJD_02090) comEA 386923..387609 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACOCJD_RS02095 (ACOCJD_02095) - 387701..388162 (+) 462 WP_000439690.1 ComE operon protein 2 -
  ACOCJD_RS02100 (ACOCJD_02100) comEC 388167..390368 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACOCJD_RS02105 (ACOCJD_02105) holA 390425..391399 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACOCJD_RS02110 (ACOCJD_02110) rpsT 391444..391695 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1109662 ACOCJD_RS02090 WP_001825349.1 386923..387609(+) (comEA) [Staphylococcus aureus strain CBTW2018008]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1109662 ACOCJD_RS02090 WP_001825349.1 386923..387609(+) (comEA) [Staphylococcus aureus strain CBTW2018008]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment