Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACOCJJ_RS09765 Genome accession   NZ_CP184561
Coordinates   1973898..1974326 (-) Length   142 a.a.
NCBI ID   WP_103203948.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBTW2018311     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1968898..1979326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOCJJ_RS09710 (ACOCJJ_09710) - 1968908..1969309 (-) 402 WP_031807827.1 hypothetical protein -
  ACOCJJ_RS09715 (ACOCJJ_09715) - 1969324..1969566 (-) 243 WP_103203951.1 SAV1978 family virulence-associated passenger protein -
  ACOCJJ_RS09720 (ACOCJJ_09720) - 1969570..1969938 (-) 369 WP_103203950.1 SA1788 family PVL leukocidin-associated protein -
  ACOCJJ_RS09725 (ACOCJJ_09725) - 1969939..1970124 (-) 186 WP_001187234.1 DUF3113 family protein -
  ACOCJJ_RS09730 (ACOCJJ_09730) - 1970129..1970533 (-) 405 WP_000049804.1 DUF1064 domain-containing protein -
  ACOCJJ_RS09735 (ACOCJJ_09735) - 1970543..1970764 (-) 222 WP_001123688.1 DUF3269 family protein -
  ACOCJJ_RS09740 (ACOCJJ_09740) - 1970777..1970938 (-) 162 WP_000237154.1 hypothetical protein -
  ACOCJJ_RS09745 (ACOCJJ_09745) - 1970932..1971705 (-) 774 WP_103203949.1 ATP-binding protein -
  ACOCJJ_RS09750 (ACOCJJ_09750) - 1971716..1972459 (-) 744 WP_000139436.1 conserved phage C-terminal domain-containing protein -
  ACOCJJ_RS09755 (ACOCJJ_09755) - 1972452..1973216 (-) 765 WP_000240900.1 AP2 domain-containing protein -
  ACOCJJ_RS09760 (ACOCJJ_09760) - 1973216..1973884 (-) 669 WP_001121805.1 putative HNHc nuclease -
  ACOCJJ_RS09765 (ACOCJJ_09765) ssbA 1973898..1974326 (-) 429 WP_103203948.1 single-stranded DNA-binding protein Machinery gene
  ACOCJJ_RS09770 (ACOCJJ_09770) - 1974326..1974949 (-) 624 WP_000139720.1 DUF1071 domain-containing protein -
  ACOCJJ_RS09775 (ACOCJJ_09775) - 1974942..1975163 (-) 222 WP_001077280.1 DUF2483 family protein -
  ACOCJJ_RS09780 (ACOCJJ_09780) - 1975173..1975433 (-) 261 WP_000291090.1 DUF1108 family protein -
  ACOCJJ_RS09785 (ACOCJJ_09785) - 1975530..1975691 (-) 162 WP_000066011.1 DUF1270 domain-containing protein -
  ACOCJJ_RS09790 (ACOCJJ_09790) - 1975684..1975905 (-) 222 WP_000594789.1 hypothetical protein -
  ACOCJJ_RS09795 (ACOCJJ_09795) - 1975976..1976206 (+) 231 WP_000395455.1 hypothetical protein -
  ACOCJJ_RS09800 (ACOCJJ_09800) - 1976382..1977122 (-) 741 WP_001148589.1 phage antirepressor KilAC domain-containing protein -
  ACOCJJ_RS09805 (ACOCJJ_09805) - 1977124..1977309 (-) 186 WP_000933365.1 helix-turn-helix domain-containing protein -
  ACOCJJ_RS09810 (ACOCJJ_09810) - 1977755..1978237 (+) 483 WP_000394410.1 hypothetical protein -
  ACOCJJ_RS09815 (ACOCJJ_09815) - 1978338..1978517 (-) 180 WP_000438352.1 hypothetical protein -
  ACOCJJ_RS09820 (ACOCJJ_09820) - 1978531..1978767 (-) 237 WP_001121116.1 helix-turn-helix domain-containing protein -
  ACOCJJ_RS09825 (ACOCJJ_09825) - 1978919..1979233 (+) 315 WP_000333630.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15937.45 Da        Isoelectric Point: 5.1632

>NTDB_id=1109554 ACOCJJ_RS09765 WP_103203948.1 1973898..1974326(-) (ssbA) [Staphylococcus aureus strain CBTW2018311]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGLLQSR
SYENKDGQRVFVTEVAADSVQFLEPKNSNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1109554 ACOCJJ_RS09765 WP_103203948.1 1973898..1974326(-) (ssbA) [Staphylococcus aureus strain CBTW2018311]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACTTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGCAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.704
  ssb Latilactobacillus sakei subsp. sakei 23K

49.412

100

0.592
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

74.648

0.43
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.657

100

0.43
  ssbA Streptococcus mutans UA159

41.549

100

0.415
  ssbB/cilA Streptococcus mitis NCTC 12261

40.845

100

0.408
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.845

100

0.408
  ssbB/cilA Streptococcus pneumoniae Rx1

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae D39

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae R6

40.141

100

0.401
  ssbB/cilA Streptococcus mitis SK321

40.141

100

0.401

Multiple sequence alignment