Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   ID09_RS00485 Genome accession   NZ_CP008921
Coordinates   70867..71337 (+) Length   156 a.a.
NCBI ID   WP_002936602.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 65867..76337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS00445 (ID09_00470) - 66193..66834 (+) 642 WP_002936630.1 adenylate kinase -
  ID09_RS00450 (ID09_00475) infA 66956..67174 (+) 219 WP_002936627.1 translation initiation factor IF-1 -
  ID09_RS00455 rpmJ 67199..67315 (+) 117 WP_001808836.1 50S ribosomal protein L36 -
  ID09_RS00460 (ID09_00480) rpsM 67335..67700 (+) 366 WP_002936622.1 30S ribosomal protein S13 -
  ID09_RS00465 (ID09_00485) rpsK 67718..68101 (+) 384 WP_004195509.1 30S ribosomal protein S11 -
  ID09_RS00470 (ID09_00490) - 68146..69084 (+) 939 WP_011921691.1 DNA-directed RNA polymerase subunit alpha -
  ID09_RS00475 (ID09_00495) rplQ 69099..69485 (+) 387 WP_000331493.1 50S ribosomal protein L17 -
  ID09_RS00480 (ID09_00500) - 69863..70660 (+) 798 WP_144239322.1 IS982 family transposase -
  ID09_RS00485 (ID09_00505) comX/sigX 70867..71337 (+) 471 WP_002936602.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 19072.97 Da        Isoelectric Point: 8.9339

>NTDB_id=110815 ID09_RS00485 WP_002936602.1 70867..71337(+) (comX/sigX) [Streptococcus suis 6407]
MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLEAQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKR
KFDRMPHEDIHELSHAIQSPGLINDELLMLRGALRDYRKNLSNDQLDKYEKLISGQCFNGRREMIRDLQIHLKDFR

Nucleotide


Download         Length: 471 bp        

>NTDB_id=110815 ID09_RS00485 WP_002936602.1 70867..71337(+) (comX/sigX) [Streptococcus suis 6407]
ATGGAATTCGAAAAAGTGTACGCAAGCGTCAAAGGTATTGTAAACAAGGCTCGAAAAGAGTTTTACATTAAACTATGGGA
TCGAGATGATTGGGAACAAGAAGGAATGATGACCTTGTTTGAATTATTGGAAGCTCAACCGTGGCTAGTTGATGAACAAG
TTCAATTATATTGTTATTTTAAAGTCAAGTTCAGAAATCGAATCAAGGATCGTATCCGCAAACAGGAAAGTCAAAAACGC
AAGTTTGACCGTATGCCACATGAAGATATTCACGAATTATCTCACGCAATACAATCACCGGGATTGATAAACGATGAACT
ATTAATGCTAAGAGGTGCCTTAAGAGATTATCGAAAAAATCTGAGTAATGATCAACTTGATAAATATGAAAAATTAATTA
GCGGACAATGTTTTAATGGTCGCCGTGAAATGATACGTGATTTACAAATTCATTTGAAAGACTTTCGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

100

100

1
  comX/sigX Streptococcus suis isolate S10

99.359

100

0.994
  comX/sigX Streptococcus suis P1/7

99.359

100

0.994
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

49.032

99.359

0.487
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

49.032

99.359

0.487
  comX/comX1 Streptococcus pneumoniae TIGR4

46.358

96.795

0.449
  comX/comX2 Streptococcus pneumoniae TIGR4

46.358

96.795

0.449
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

45.752

98.077

0.449
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

45.098

98.077

0.442
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

45.098

98.077

0.442
  comX/comX1 Streptococcus pneumoniae Rx1

45.695

96.795

0.442
  comX/comX2 Streptococcus pneumoniae D39

45.695

96.795

0.442
  comX/comX1 Streptococcus pneumoniae D39

45.695

96.795

0.442
  comX/comX2 Streptococcus pneumoniae R6

45.695

96.795

0.442
  comX/comX1 Streptococcus pneumoniae R6

45.695

96.795

0.442
  comX/comX2 Streptococcus pneumoniae Rx1

45.695

96.795

0.442
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

44.444

98.077

0.436
  comX/sigX Streptococcus mutans UA159

43.226

99.359

0.429
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

40.645

99.359

0.404
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

40.645

99.359

0.404
  comX Streptococcus sobrinus strain NIDR 6715-7

40.523

98.077

0.397
  comX Streptococcus thermophilus LMG 18311

40.523

98.077

0.397
  comX Streptococcus thermophilus LMD-9

40.523

98.077

0.397
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

40

99.359

0.397
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

40

99.359

0.397
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

40

99.359

0.397
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

40

99.359

0.397
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

38.854

100

0.391
  comX Streptococcus salivarius SK126

39.869

98.077

0.391
  comX/sigX Streptococcus salivarius strain HSISS4

39.869

98.077

0.391

Multiple sequence alignment