Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACOAJ7_RS11240 | Genome accession | NZ_CP184249 |
| Coordinates | 2445867..2446397 (+) | Length | 176 a.a. |
| NCBI ID | WP_180741590.1 | Uniprot ID | A0A7V8PK95 |
| Organism | Pectobacterium brasiliense strain CSR3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2440867..2451397
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOAJ7_RS11225 (ACOAJ7_11225) | - | 2440987..2441844 (-) | 858 | WP_420064165.1 | hypothetical protein | - |
| ACOAJ7_RS11230 (ACOAJ7_11230) | - | 2442271..2442690 (-) | 420 | WP_180741592.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| ACOAJ7_RS11235 (ACOAJ7_11235) | uvrA | 2442706..2445540 (-) | 2835 | WP_420064166.1 | excinuclease ABC subunit UvrA | - |
| ACOAJ7_RS11240 (ACOAJ7_11240) | ssb | 2445867..2446397 (+) | 531 | WP_180741590.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| ACOAJ7_RS11245 (ACOAJ7_11245) | - | 2446483..2446974 (+) | 492 | WP_180741589.1 | hypothetical protein | - |
| ACOAJ7_RS11250 (ACOAJ7_11250) | - | 2447000..2448040 (-) | 1041 | WP_180741588.1 | LacI family DNA-binding transcriptional regulator | - |
| ACOAJ7_RS11255 (ACOAJ7_11255) | - | 2448040..2449092 (-) | 1053 | WP_219606630.1 | carbohydrate ABC transporter permease | - |
| ACOAJ7_RS11260 (ACOAJ7_11260) | - | 2449104..2450099 (-) | 996 | WP_180741587.1 | carbohydrate ABC transporter permease | - |
| ACOAJ7_RS11265 (ACOAJ7_11265) | - | 2450123..2451214 (-) | 1092 | WP_420064168.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18829.82 Da Isoelectric Point: 5.2456
>NTDB_id=1108054 ACOAJ7_RS11240 WP_180741590.1 2445867..2446397(+) (ssb) [Pectobacterium brasiliense strain CSR3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGAQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQNSAP
AQSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGAQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQNSAP
AQSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=1108054 ACOAJ7_RS11240 WP_180741590.1 2445867..2446397(+) (ssb) [Pectobacterium brasiliense strain CSR3]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCGACGTCAGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAATTGGCAGAAGTCGCAGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATT
GAAGGCGCACTGCAAACCCGTAAATGGGCCGACCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGTGGCGCTCAGCAACAAGGCGGTTGGGGTC
AACCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAATCTCAACAGCGTCCGGCACAGAACAGCGCTCCA
GCACAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCGACGTCAGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAATTGGCAGAAGTCGCAGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATT
GAAGGCGCACTGCAAACCCGTAAATGGGCCGACCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGTGGCGCTCAGCAACAAGGCGGTTGGGGTC
AACCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAATCTCAACAGCGTCCGGCACAGAACAGCGCTCCA
GCACAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
72.193 |
100 |
0.767 |
| ssb | Glaesserella parasuis strain SC1401 |
57.297 |
100 |
0.602 |
| ssb | Neisseria meningitidis MC58 |
46.591 |
100 |
0.466 |
| ssb | Neisseria gonorrhoeae MS11 |
46.591 |
100 |
0.466 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.723 |
100 |
0.369 |