Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | HV96_RS26500 | Genome accession | NZ_CP008871 |
| Coordinates | 5524134..5524598 (-) | Length | 154 a.a. |
| NCBI ID | WP_021205141.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain W45909 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5519134..5529598
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV96_RS26485 (HV96_02050) | nadC | 5521644..5522492 (+) | 849 | WP_003161760.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| HV96_RS26495 (HV96_02040) | - | 5522673..5524052 (-) | 1380 | WP_223719891.1 | O-antigen ligase family protein | - |
| HV96_RS26500 (HV96_02035) | pilA/pilAI | 5524134..5524598 (-) | 465 | WP_021205141.1 | pilin | Machinery gene |
| HV96_RS26505 (HV96_02030) | pilB | 5524829..5526529 (+) | 1701 | WP_021205142.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| HV96_RS26510 (HV96_02025) | pilC | 5526533..5527750 (+) | 1218 | WP_003161763.1 | type II secretion system F family protein | Machinery gene |
| HV96_RS26515 (HV96_02020) | pilD | 5527751..5528623 (+) | 873 | WP_003107301.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| HV96_RS26520 (HV96_02015) | coaE | 5528620..5529231 (+) | 612 | WP_023114838.1 | dephospho-CoA kinase | - |
| HV96_RS26525 (HV96_02010) | yacG | 5529228..5529428 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16076.44 Da Isoelectric Point: 9.0145
>NTDB_id=110475 HV96_RS26500 WP_021205141.1 5524134..5524598(-) (pilA/pilAI) [Pseudomonas aeruginosa strain W45909]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEVSALKTAAESAILEGKEIVSSKTPTKDQYDIGFTG
STLLKGSEKGQITVKNGTLPTVQLEATLDGSSGAAIKGAVITVSRTADGVWGCSISSTPANWKPNYAPSNCPKS
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEVSALKTAAESAILEGKEIVSSKTPTKDQYDIGFTG
STLLKGSEKGQITVKNGTLPTVQLEATLDGSSGAAIKGAVITVSRTADGVWGCSISSTPANWKPNYAPSNCPKS
Nucleotide
Download Length: 465 bp
>NTDB_id=110475 HV96_RS26500 WP_021205141.1 5524134..5524598(-) (pilA/pilAI) [Pseudomonas aeruginosa strain W45909]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCTGTGAGTGAAGTCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGGAAAGAAATTGTTTCCAGTAAGACTCCTACCAAGGACCAATATGATATTGGATTTACCGGT
TCTACCTTGCTGAAAGGGTCGGAGAAAGGTCAGATTACTGTGAAAAATGGTACTCTGCCTACTGTGCAGTTGGAAGCTAC
TCTGGATGGTTCTTCCGGTGCCGCTATTAAAGGTGCAGTTATTACCGTTTCGCGTACCGCTGATGGGGTGTGGGGTTGCT
CGATCAGTAGCACTCCTGCTAACTGGAAACCAAACTATGCCCCCTCTAACTGCCCGAAATCCTAA
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCTGTGAGTGAAGTCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGGAAAGAAATTGTTTCCAGTAAGACTCCTACCAAGGACCAATATGATATTGGATTTACCGGT
TCTACCTTGCTGAAAGGGTCGGAGAAAGGTCAGATTACTGTGAAAAATGGTACTCTGCCTACTGTGCAGTTGGAAGCTAC
TCTGGATGGTTCTTCCGGTGCCGCTATTAAAGGTGCAGTTATTACCGTTTCGCGTACCGCTGATGGGGTGTGGGGTTGCT
CGATCAGTAGCACTCCTGCTAACTGGAAACCAAACTATGCCCCCTCTAACTGCCCGAAATCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
47.945 |
94.805 |
0.455 |
| pilA | Pseudomonas aeruginosa PAK |
42.857 |
100 |
0.448 |
| pilA | Acinetobacter baumannii strain A118 |
45.205 |
94.805 |
0.429 |
| comP | Acinetobacter baylyi ADP1 |
39.264 |
100 |
0.416 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
38.776 |
95.455 |
0.37 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
41.007 |
90.26 |
0.37 |