Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACM9DY_RS12845 Genome accession   NZ_CP182170
Coordinates   2602955..2603290 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain F3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2597955..2608290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM9DY_RS12825 (ACM9DY_12825) gcvT 2598566..2599666 (-) 1101 WP_303302216.1 glycine cleavage system aminomethyltransferase GcvT -
  ACM9DY_RS12830 (ACM9DY_12830) - 2600089..2601759 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  ACM9DY_RS12835 (ACM9DY_12835) - 2601777..2602571 (+) 795 WP_003153106.1 YqhG family protein -
  ACM9DY_RS12840 (ACM9DY_12840) sinI 2602748..2602921 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ACM9DY_RS12845 (ACM9DY_12845) sinR 2602955..2603290 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACM9DY_RS12850 (ACM9DY_12850) tasA 2603338..2604123 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  ACM9DY_RS12855 (ACM9DY_12855) sipW 2604187..2604771 (-) 585 WP_012117977.1 signal peptidase I SipW -
  ACM9DY_RS12860 (ACM9DY_12860) tapA 2604743..2605414 (-) 672 WP_115996533.1 amyloid fiber anchoring/assembly protein TapA -
  ACM9DY_RS12865 (ACM9DY_12865) - 2605673..2606002 (+) 330 WP_230639577.1 DUF3889 domain-containing protein -
  ACM9DY_RS12870 (ACM9DY_12870) - 2606042..2606221 (-) 180 WP_003153093.1 YqzE family protein -
  ACM9DY_RS12875 (ACM9DY_12875) comGG 2606278..2606655 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACM9DY_RS12880 (ACM9DY_12880) comGF 2606656..2607051 (-) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  ACM9DY_RS12885 (ACM9DY_12885) comGE 2607065..2607379 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACM9DY_RS12890 (ACM9DY_12890) comGD 2607363..2607800 (-) 438 WP_044053464.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACM9DY_RS12895 (ACM9DY_12895) comGC 2607790..2608098 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1100697 ACM9DY_RS12845 WP_003153104.1 2602955..2603290(+) (sinR) [Bacillus velezensis strain F3]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1100697 ACM9DY_RS12845 WP_003153104.1 2602955..2603290(+) (sinR) [Bacillus velezensis strain F3]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment