Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACM660_RS12345 Genome accession   NZ_CP181170
Coordinates   2577282..2578328 (+) Length   348 a.a.
NCBI ID   WP_005202860.1    Uniprot ID   N9T1H1
Organism   Acinetobacter sp. SEK541     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2572282..2583328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM660_RS12320 (ACM660_12320) - 2573781..2574197 (+) 417 WP_005202873.1 hypothetical protein -
  ACM660_RS12325 (ACM660_12325) - 2574344..2575075 (-) 732 WP_005202872.1 histidine phosphatase family protein -
  ACM660_RS12330 (ACM660_12330) - 2575127..2575984 (-) 858 WP_005202870.1 3'(2'),5'-bisphosphate nucleotidase CysQ family protein -
  ACM660_RS12335 (ACM660_12335) - 2575996..2576700 (+) 705 WP_005202868.1 HAD-IA family hydrolase -
  ACM660_RS12340 (ACM660_12340) - 2576684..2577112 (+) 429 WP_005202861.1 RNA-binding S4 domain-containing protein -
  ACM660_RS12345 (ACM660_12345) recA 2577282..2578328 (+) 1047 WP_005202860.1 recombinase RecA Machinery gene
  ACM660_RS12350 (ACM660_12350) - 2578368..2578850 (+) 483 WP_005202859.1 regulatory protein RecX -
  ACM660_RS12360 (ACM660_12360) - 2579282..2580139 (+) 858 WP_004807964.1 YbgF trimerization domain-containing protein -
  ACM660_RS12365 (ACM660_12365) - 2580202..2582073 (-) 1872 WP_005202858.1 SurA N-terminal domain-containing protein -
  ACM660_RS12370 (ACM660_12370) - 2582213..2582485 (-) 273 WP_004639426.1 HU family DNA-binding protein -
  ACM660_RS12375 (ACM660_12375) - 2582654..2583109 (-) 456 WP_004807968.1 phasin family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37970.48 Da        Isoelectric Point: 5.1637

>NTDB_id=1099388 ACM660_RS12345 WP_005202860.1 2577282..2578328(+) (recA) [Acinetobacter sp. SEK541]
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKNGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGDEITGNE
TRVKVVKNKMAPPFKEAVFQIMYGRGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPLMAQEIEK
IIREQLLTKNKNEAAQNEIEEEPDLLEI

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1099388 ACM660_RS12345 WP_005202860.1 2577282..2578328(+) (recA) [Acinetobacter sp. SEK541]
ATGGATGATAATAAAAGTAAGGCGTTACAAGCTGCGTTGAGCCAGATTGAAAAACAATTTGGTAAAAATACCGTGATGCG
CTTAGGTGATAACACCGTACAAGCAGTTGAAGCTGTTTCTACAGGTTCTTTAACACTCGATATCGCATTAGGGATTGGCG
GATTACCTAAAGGCCGTATCATTGAAATTTACGGCCCTGAATCATCAGGTAAAACGACCATGACATTGCAGGCCATTGCT
CAATGTCAAAAGAATGGCGGTACCTGTGCCTTTATCGATGCCGAACATGCATTAGACCCTGAATACGCACGTAAGCTCGG
TGTAGATATTGATAACCTTTTGGTTTCACAACCTGACCACGGTGAGCAAGCACTCGAAATTGCGGATATGTTGGTACGCT
CAGGCGCAATCGACTTAATCGTTGTCGACTCTGTTGCCGCATTAACGCCTAAAGCTGAAATTGAAGGCGAAATGGGTGAT
TCACACATGGGCTTACAAGCACGTTTGATGAGTCAGGCACTGCGTAAAATCACAGGTAATGCAAAACGTTCGAACTGTAT
GGTGATCTTCATTAACCAAATCCGTATGAAGATTGGTGTCATGTTTGGTAGCCCAGAAACAACGACTGGTGGTAATGCGC
TTAAATTCTACGCTTCAGTTCGTTTAGATATTCGTCGTATCGGTGCAGTAAAAGAAGGCGATGAAATTACAGGTAACGAA
ACACGCGTTAAAGTTGTTAAAAACAAGATGGCACCTCCGTTCAAAGAAGCGGTCTTCCAGATCATGTATGGTCGAGGTAC
CAACCAGTTGGGCGAACTCGTTGACTTAGCCGTTCAACAAGATATCGTTCAAAAAGCAGGTGCTTGGTATTCATACCAAG
GTAACAAAATTGGGCAGGGTAAAAATAATGTGATTCGTCATTTTGAAGAGAATCCATTGATGGCTCAAGAAATTGAAAAA
ATCATTCGTGAACAGCTTCTCACCAAGAATAAAAACGAAGCAGCTCAAAATGAGATTGAAGAAGAACCAGATTTACTAGA
AATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9T1H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

92.775

99.425

0.922
  recA Acinetobacter baylyi ADP1

91.667

100

0.917
  recA Pseudomonas stutzeri DSM 10701

72.674

98.851

0.718
  recA Vibrio cholerae strain A1552

74.312

93.966

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

93.966

0.698
  recA Glaesserella parasuis strain SC1401

67.335

100

0.675
  recA Ralstonia pseudosolanacearum GMI1000

66.193

100

0.67
  recA Neisseria gonorrhoeae strain FA1090

69.136

93.103

0.644
  recA Neisseria gonorrhoeae MS11

69.136

93.103

0.644
  recA Neisseria gonorrhoeae MS11

69.136

93.103

0.644
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.772

95.977

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

93.966

0.609
  recA Helicobacter pylori strain NCTC11637

64.832

93.966

0.609
  recA Helicobacter pylori 26695

64.22

93.966

0.603
  recA Streptococcus mitis NCTC 12261

58.475

100

0.595
  recA Streptococcus mutans UA159

58.621

100

0.586
  recA Streptococcus pneumoniae Rx1

59.302

98.851

0.586
  recA Streptococcus pneumoniae D39

59.302

98.851

0.586
  recA Streptococcus pneumoniae R6

59.302

98.851

0.586
  recA Streptococcus pneumoniae TIGR4

59.302

98.851

0.586
  recA Streptococcus mitis SK321

59.531

97.989

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.81

90.517

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

62.112

92.529

0.575
  recA Streptococcus pyogenes NZ131

61.538

93.391

0.575
  recA Lactococcus lactis subsp. cremoris KW2

59.443

92.816

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

59.502

92.241

0.549

Multiple sequence alignment