Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMVP2_RS11670 Genome accession   NZ_CP180355
Coordinates   2716126..2716557 (-) Length   143 a.a.
NCBI ID   WP_339784602.1    Uniprot ID   -
Organism   MAG: Imperialibacter sp. isolate tig00000051     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2711126..2721557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVP2_RS11650 (ACMVP2_11650) - 2711256..2712023 (+) 768 WP_339784612.1 LytTR family DNA-binding domain-containing protein -
  ACMVP2_RS11655 (ACMVP2_11655) recG 2712027..2714120 (-) 2094 WP_339784610.1 ATP-dependent DNA helicase RecG -
  ACMVP2_RS11660 (ACMVP2_11660) gldD 2714150..2714731 (-) 582 WP_339784607.1 gliding motility lipoprotein GldD -
  ACMVP2_RS11665 (ACMVP2_11665) gldE 2714741..2716099 (-) 1359 WP_339784605.1 gliding motility-associated protein GldE -
  ACMVP2_RS11670 (ACMVP2_11670) ssb 2716126..2716557 (-) 432 WP_339784602.1 single-stranded DNA-binding protein Machinery gene
  ACMVP2_RS11675 (ACMVP2_11675) mutY 2716608..2717681 (-) 1074 WP_416867813.1 A/G-specific adenine glycosylase -
  ACMVP2_RS11680 (ACMVP2_11680) - 2717820..2718110 (+) 291 WP_317489087.1 HU family DNA-binding protein -
  ACMVP2_RS11685 (ACMVP2_11685) - 2718139..2718960 (+) 822 WP_416867814.1 tetratricopeptide repeat protein -
  ACMVP2_RS11690 (ACMVP2_11690) - 2719107..2720660 (+) 1554 WP_152001272.1 Rne/Rng family ribonuclease -
  ACMVP2_RS11695 (ACMVP2_11695) - 2720657..2721298 (-) 642 WP_339784594.1 outer membrane beta-barrel protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15549.36 Da        Isoelectric Point: 5.2666

>NTDB_id=1095438 ACMVP2_RS11670 WP_339784602.1 2716126..2716557(-) (ssb) [MAG: Imperialibacter sp. isolate tig00000051]
MSGVNKVILLGNLGKDPEIRHLENGRAVTNFTLATSEVYKNKEGNKVTNTEWHNVVLWTPLAEVAEKYLKKGSQVYIEGK
ITTRSYDDKDGNKRYITEVVGREMTLVGGRPDGGGGSSEPQSSGSTQPAPVAAEPTDLDDLPF

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1095438 ACMVP2_RS11670 WP_339784602.1 2716126..2716557(-) (ssb) [MAG: Imperialibacter sp. isolate tig00000051]
ATGTCAGGAGTAAATAAAGTGATTCTGCTTGGAAACCTTGGAAAAGACCCGGAAATACGGCACCTCGAGAACGGACGGGC
CGTGACAAACTTCACTTTGGCTACCAGTGAGGTTTACAAAAACAAGGAAGGAAACAAAGTCACCAACACTGAGTGGCACA
ACGTTGTTTTATGGACTCCGTTGGCAGAAGTAGCTGAAAAGTATCTGAAAAAGGGCAGCCAGGTGTATATTGAGGGGAAA
ATCACAACCCGCTCTTACGACGATAAAGACGGAAACAAGCGATACATTACTGAAGTGGTGGGAAGGGAAATGACCCTTGT
TGGAGGAAGGCCAGACGGCGGCGGAGGCTCATCAGAACCCCAAAGCAGTGGCTCCACCCAACCAGCTCCGGTGGCAGCAG
AGCCAACCGATCTGGATGATTTGCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

40.698

100

0.49
  ssb Neisseria gonorrhoeae MS11

40.698

100

0.49
  ssb Vibrio cholerae strain A1552

54.237

82.517

0.448
  ssb Glaesserella parasuis strain SC1401

47.015

93.706

0.441
  ssb Latilactobacillus sakei subsp. sakei 23K

30.409

100

0.364

Multiple sequence alignment