Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACK8DA_RS17040 Genome accession   NZ_CP179869
Coordinates   3559358..3559993 (+) Length   211 a.a.
NCBI ID   WP_004745464.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain MRSN122172     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3554358..3564993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DA_RS17025 (ACK8DA_17025) adeT2 3555418..3556404 (-) 987 WP_000712908.1 putative multidrug efflux protein AdeT2 -
  ACK8DA_RS17030 (ACK8DA_17030) - 3556484..3557299 (-) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  ACK8DA_RS17035 (ACK8DA_17035) recG 3557320..3559365 (+) 2046 WP_004745466.1 ATP-dependent DNA helicase RecG -
  ACK8DA_RS17040 (ACK8DA_17040) comF 3559358..3559993 (+) 636 WP_004745464.1 ComF family protein Machinery gene
  ACK8DA_RS17045 (ACK8DA_17045) - 3559996..3560397 (-) 402 WP_004745461.1 NUDIX hydrolase -
  ACK8DA_RS17050 (ACK8DA_17050) - 3560412..3560993 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  ACK8DA_RS17055 (ACK8DA_17055) - 3561151..3562164 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  ACK8DA_RS17060 (ACK8DA_17060) - 3562234..3562521 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  ACK8DA_RS17065 (ACK8DA_17065) - 3562533..3563174 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  ACK8DA_RS17070 (ACK8DA_17070) - 3563201..3563881 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACK8DA_RS17075 (ACK8DA_17075) mlaE 3563881..3564657 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24567.73 Da        Isoelectric Point: 9.5738

>NTDB_id=1093217 ACK8DA_RS17040 WP_004745464.1 3559358..3559993(+) (comF) [Acinetobacter baumannii strain MRSN122172]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALCQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1093217 ACK8DA_RS17040 WP_004745464.1 3559358..3559993(+) (comF) [Acinetobacter baumannii strain MRSN122172]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCGTTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCCAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTATG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981

Multiple sequence alignment