Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACL2XH_RS12630 Genome accession   NZ_CP178735
Coordinates   2753072..2753638 (+) Length   188 a.a.
NCBI ID   WP_413727367.1    Uniprot ID   -
Organism   Sodalis sp. RH18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2748072..2758638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL2XH_RS12615 (ACL2XH_12615) - 2748410..2749252 (+) 843 WP_413731507.1 BtpA/SgcQ family protein -
  ACL2XH_RS12620 (ACL2XH_12620) - 2749255..2749899 (+) 645 WP_413721852.1 TenA family protein -
  ACL2XH_RS12625 (ACL2XH_12625) uvrA 2749956..2752811 (-) 2856 WP_410012601.1 excinuclease ABC subunit UvrA -
  ACL2XH_RS12630 (ACL2XH_12630) ssb 2753072..2753638 (+) 567 WP_413727367.1 single-stranded DNA-binding protein Machinery gene
  ACL2XH_RS12635 (ACL2XH_12635) - 2754253..2756133 (+) 1881 WP_413721853.1 group II intron reverse transcriptase -
  ACL2XH_RS12640 (ACL2XH_12640) - 2756389..2757933 (-) 1545 WP_413721854.1 amidohydrolase family protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 19441.49 Da        Isoelectric Point: 5.2456

>NTDB_id=1091192 ACL2XH_RS12630 WP_413727367.1 2753072..2753638(+) (ssb) [Sodalis sp. RH18]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANMTLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGALQTRKWTDQGGQERYTTEVVVNVGGTMQMLGGRQGGGAAGAGAGAGGGQQGWGQPQQPQGGNAQFSGNPGGAAPAAP
AASRPAAQNNAPAAGNEPPMDFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1091192 ACL2XH_RS12630 WP_413727367.1 2753072..2753638(+) (ssb) [Sodalis sp. RH18]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTAGTCGGAAATCTGGGCCAGGATCCGGAAGTCCGCTACATGCCGAACGG
TGGCGCCGTGGCCAACATGACTCTGGCCACTTCCGAGAGCTGGCGCGACAAGCAGACCGGCGAGACCAAGGAAAAAACGG
AATGGCACCGCGTGGTGCTGTTCGGCAAGCTGGCGGAAGTGGCCGGCGAATATCTGAAAAAAGGGTCGCAGGTCTATATC
GAAGGCGCGTTGCAAACGCGTAAATGGACCGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGCCAGGGCGGCGGCGCGGCGGGTGCCGGCGCGGGCGCGGGCGGCGGCCAGCAGG
GCTGGGGCCAGCCGCAGCAGCCGCAGGGCGGCAACGCGCAGTTCAGCGGCAATCCGGGCGGCGCGGCGCCGGCAGCGCCC
GCGGCCAGTCGTCCCGCCGCGCAGAACAATGCGCCGGCCGCGGGCAATGAGCCGCCGATGGATTTTGACGACGATATCCC
GTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.492

100

0.676
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.559
  ssb Neisseria gonorrhoeae MS11

47.027

98.404

0.463
  ssb Neisseria meningitidis MC58

46.739

97.872

0.457

Multiple sequence alignment