Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACL2XM_RS20185 Genome accession   NZ_CP178733
Coordinates   4420204..4420770 (-) Length   188 a.a.
NCBI ID   WP_413727367.1    Uniprot ID   -
Organism   Sodalis sp. RH20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4415204..4425770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL2XM_RS20175 (ACL2XM_20175) - 4415909..4417453 (+) 1545 WP_413721854.1 amidohydrolase family protein -
  ACL2XM_RS20180 (ACL2XM_20180) - 4417709..4419589 (-) 1881 WP_413721853.1 group II intron reverse transcriptase -
  ACL2XM_RS20185 (ACL2XM_20185) ssb 4420204..4420770 (-) 567 WP_413727367.1 single-stranded DNA-binding protein Machinery gene
  ACL2XM_RS20190 (ACL2XM_20190) uvrA 4421031..4423886 (+) 2856 WP_410012601.1 excinuclease ABC subunit UvrA -
  ACL2XM_RS20195 (ACL2XM_20195) - 4423943..4424587 (-) 645 WP_413721852.1 TenA family protein -
  ACL2XM_RS20200 (ACL2XM_20200) - 4424590..4425432 (-) 843 WP_413731507.1 BtpA/SgcQ family protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 19441.49 Da        Isoelectric Point: 5.2456

>NTDB_id=1091152 ACL2XM_RS20185 WP_413727367.1 4420204..4420770(-) (ssb) [Sodalis sp. RH20]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANMTLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGALQTRKWTDQGGQERYTTEVVVNVGGTMQMLGGRQGGGAAGAGAGAGGGQQGWGQPQQPQGGNAQFSGNPGGAAPAAP
AASRPAAQNNAPAAGNEPPMDFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1091152 ACL2XM_RS20185 WP_413727367.1 4420204..4420770(-) (ssb) [Sodalis sp. RH20]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTAGTCGGAAATCTGGGCCAGGATCCGGAAGTCCGCTACATGCCGAACGG
TGGCGCCGTGGCCAACATGACTCTGGCCACTTCCGAGAGCTGGCGCGACAAGCAGACCGGCGAGACCAAGGAAAAAACGG
AATGGCACCGCGTGGTGCTGTTCGGCAAGCTGGCGGAAGTGGCCGGCGAATATCTGAAAAAAGGGTCGCAGGTCTATATC
GAAGGCGCGTTGCAAACGCGTAAATGGACCGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGCCAGGGCGGCGGCGCGGCGGGTGCCGGCGCGGGCGCGGGCGGCGGCCAGCAGG
GCTGGGGCCAGCCGCAGCAGCCGCAGGGCGGCAACGCGCAGTTCAGCGGCAATCCGGGCGGCGCGGCGCCGGCAGCGCCC
GCGGCCAGTCGTCCCGCCGCGCAGAACAATGCGCCGGCCGCGGGCAATGAGCCGCCGATGGATTTTGACGACGATATCCC
GTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.492

100

0.676
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.559
  ssb Neisseria gonorrhoeae MS11

47.027

98.404

0.463
  ssb Neisseria meningitidis MC58

46.739

97.872

0.457

Multiple sequence alignment