Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACL6C3_RS24770 Genome accession   NZ_CP178543
Coordinates   6137549..6138640 (-) Length   363 a.a.
NCBI ID   WP_413162094.1    Uniprot ID   -
Organism   Capilliphycus salinus ALCB114379 voucher ALCB 114379     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6132549..6143640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6C3_RS24755 (ACL6C3_24755) - 6132988..6135366 (-) 2379 WP_413162085.1 AMIN domain-containing protein -
  ACL6C3_RS24760 (ACL6C3_24760) - 6135690..6136505 (-) 816 WP_413162088.1 pilus assembly protein PilO -
  ACL6C3_RS24765 (ACL6C3_24765) - 6136502..6137317 (-) 816 WP_413162091.1 PilN domain-containing protein -
  ACL6C3_RS24770 (ACL6C3_24770) pilM 6137549..6138640 (-) 1092 WP_413162094.1 type IV pilus biogenesis protein PilM Machinery gene
  ACL6C3_RS24775 (ACL6C3_24775) - 6139024..6140877 (-) 1854 WP_413162096.1 S9 family peptidase -
  ACL6C3_RS24780 (ACL6C3_24780) - 6141088..6141366 (+) 279 WP_413162098.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 39832.70 Da        Isoelectric Point: 4.1829

>NTDB_id=1090047 ACL6C3_RS24770 WP_413162094.1 6137549..6138640(-) (pilM) [Capilliphycus salinus ALCB114379 voucher ALCB 114379]
MVSFFKGLFSGKKPGIGIELASERIHIVELRKKGNDLKLVNIASTPVPEDVVQDGQIIDTPTMAELIQSTLADKNIKTKR
VATAIPGREAVTRLISVPAELNEEELKDYMNAEAGLYLPFSREEADVDYQKLGMFVDEDGIEKMQVLLVATRKEVTNTYL
ETFEQAELKIDVIEVSSFALIRTLKNQLQQFSSSEAAIIADLEFDSTELAIVVDGVPQFNRTIPIGLFQVQTALNNAMNL
PPSRDVSELQAMTLPVTDTMGALSDPNPGTNAIIKILSELADELRRSIDFYINQSDGLEIAQLLLTGPGAAIGQLDDFFM
QRLAMPALQVDPVEMLSLQIDQEIPPEQRASLGVALGLGMRVS

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=1090047 ACL6C3_RS24770 WP_413162094.1 6137549..6138640(-) (pilM) [Capilliphycus salinus ALCB114379 voucher ALCB 114379]
ATGGTCAGCTTTTTTAAGGGTCTTTTTTCCGGGAAAAAACCAGGGATTGGGATTGAGTTGGCATCGGAACGAATTCATAT
CGTTGAACTGCGAAAAAAAGGGAATGATTTAAAATTAGTGAATATTGCCTCAACTCCCGTGCCGGAAGATGTGGTTCAAG
ACGGGCAGATTATTGATACGCCGACAATGGCGGAGTTAATTCAGTCTACGTTAGCCGATAAAAATATTAAAACAAAACGG
GTCGCAACCGCCATCCCCGGACGGGAAGCCGTCACCCGTTTAATTTCAGTTCCGGCCGAACTCAACGAAGAAGAACTCAA
AGATTATATGAATGCCGAAGCCGGACTTTATTTGCCTTTTTCTCGGGAAGAAGCCGACGTTGACTATCAGAAATTGGGGA
TGTTTGTTGATGAAGACGGCATCGAAAAAATGCAGGTGTTGTTAGTGGCAACCCGCAAAGAAGTTACCAATACTTATTTA
GAAACGTTTGAACAAGCCGAACTGAAAATAGATGTTATAGAAGTGAGTAGTTTTGCGCTGATTCGCACTTTAAAAAATCA
ACTTCAACAGTTTTCGTCATCGGAAGCTGCGATCATAGCCGACCTCGAATTTGACAGTACAGAACTGGCGATCGTTGTCG
ATGGGGTTCCCCAATTTAATCGCACCATTCCGATCGGGTTATTTCAAGTACAAACCGCCCTCAACAATGCGATGAATTTG
CCCCCGTCGAGAGACGTCAGCGAACTGCAAGCCATGACCCTGCCCGTGACTGATACAATGGGAGCATTGAGCGATCCCAA
TCCGGGGACGAATGCAATTATTAAAATTCTCTCCGAACTCGCCGATGAACTGCGCCGTTCCATTGATTTTTATATTAATC
AAAGCGACGGTTTAGAGATCGCACAACTGTTACTCACAGGCCCGGGGGCAGCAATTGGACAACTCGATGACTTTTTCATG
CAACGGTTAGCCATGCCCGCCCTGCAAGTCGATCCGGTGGAAATGCTCTCATTACAAATCGATCAGGAGATTCCGCCCGA
ACAACGTGCTAGCTTAGGAGTAGCTTTGGGGTTGGGAATGCGAGTCAGTTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-361)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

55.068

100

0.554

Multiple sequence alignment