Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACKTVC_RS37190 Genome accession   NZ_AP031316
Coordinates   7346982..7347476 (-) Length   164 a.a.
NCBI ID   WP_213429270.1    Uniprot ID   -
Organism   Paenibacillus melissococcoides strain J6TS7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7341982..7352476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTVC_RS37170 (PMJ6TS7_75270) - 7343492..7344418 (-) 927 WP_213429273.1 DUF2232 domain-containing protein -
  ACKTVC_RS37175 (PMJ6TS7_75280) - 7344546..7344968 (-) 423 WP_213429272.1 CBS domain-containing protein -
  ACKTVC_RS37180 (PMJ6TS7_75290) - 7345087..7346064 (-) 978 WP_213429271.1 LCP family protein -
  ACKTVC_RS37185 (PMJ6TS7_75300) rpsR 7346686..7346961 (-) 276 WP_006678722.1 30S ribosomal protein S18 -
  ACKTVC_RS37190 (PMJ6TS7_75310) ssbA 7346982..7347476 (-) 495 WP_213429270.1 single-stranded DNA-binding protein Machinery gene
  ACKTVC_RS37195 (PMJ6TS7_75320) rpsF 7347524..7347811 (-) 288 WP_168178522.1 30S ribosomal protein S6 -
  ACKTVC_RS37200 - 7348087..7348286 (+) 200 Protein_7323 YjzC family protein -
  ACKTVC_RS37210 (PMJ6TS7_75330) - 7349000..7349218 (-) 219 WP_213429269.1 DUF951 domain-containing protein -
  ACKTVC_RS37215 (PMJ6TS7_75340) - 7349208..7350137 (-) 930 WP_213429268.1 mechanosensitive ion channel family protein -
  ACKTVC_RS37220 (PMJ6TS7_75350) - 7350142..7350417 (-) 276 WP_213429267.1 DUF3343 domain-containing protein -
  ACKTVC_RS37225 (PMJ6TS7_75360) yyaC 7350524..7351111 (+) 588 WP_213429266.1 spore protease YyaC -
  ACKTVC_RS37230 (PMJ6TS7_75370) - 7351108..7351569 (-) 462 WP_373871484.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18070.87 Da        Isoelectric Point: 5.0078

>NTDB_id=108664 ACKTVC_RS37190 WP_213429270.1 7346982..7347476(-) (ssbA) [Paenibacillus melissococcoides strain J6TS7]
MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPFSNQNGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
SYDNNEGKRVYVTEVIADNVRFLESNRDSGGRRDDMGGGYGGGQPNNNSRPYGGGGSSQSRGPAADPFSDDGRPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=108664 ACKTVC_RS37190 WP_213429270.1 7346982..7347476(-) (ssbA) [Paenibacillus melissococcoides strain J6TS7]
ATGTTGAATCGCGTGATCTTGATTGGTCGTCTAACCCGTGACCCTGAATTGCGCTATACGCCATCCGGAGTTGCTGTGAC
GCAATTTACGTTGGCGGTCGATCGTCCGTTCTCGAACCAGAATGGCGAGCGGGAGGCGGATTTCATTCCCGTGGTCACAT
GGCGGCAGTTGGCAGAGACTTGCGCCAATTATTTGCGCAAAGGTCGGCTAACGGCCGTGGAAGGCCGAATCCAAGTCCGC
AGTTACGACAACAATGAAGGGAAGCGCGTATACGTTACGGAGGTTATCGCCGATAATGTGCGATTCCTGGAGTCCAACCG
CGACAGCGGAGGAAGACGTGACGATATGGGCGGAGGTTATGGCGGCGGACAGCCGAACAATAACTCGCGGCCATATGGCG
GAGGAGGCTCTAGCCAGTCCCGCGGTCCGGCAGCGGATCCATTCTCTGACGACGGCAGACCGATCGATATATCTGATGAT
GATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.07

100

0.567
  ssb Latilactobacillus sakei subsp. sakei 23K

49.412

100

0.512
  ssb Neisseria meningitidis MC58

36.413

100

0.409
  ssb Neisseria gonorrhoeae MS11

36.413

100

0.409
  ssb Glaesserella parasuis strain SC1401

33.702

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

63.415

0.366

Multiple sequence alignment