Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACLHWB_RS08225 Genome accession   NZ_CP177123
Coordinates   1714308..1715558 (+) Length   416 a.a.
NCBI ID   WP_193989625.1    Uniprot ID   -
Organism   Vagococcus salmoninarum strain 2022-03     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1709308..1720558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLHWB_RS08205 (ACLHWB_08205) yfmF 1709953..1711218 (+) 1266 WP_193989622.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  ACLHWB_RS08210 (ACLHWB_08210) yfmH 1711218..1712522 (+) 1305 WP_193989623.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACLHWB_RS08215 (ACLHWB_08215) - 1712684..1713571 (+) 888 WP_193989624.1 RodZ domain-containing protein -
  ACLHWB_RS08220 (ACLHWB_08220) pgsA 1713604..1714182 (+) 579 WP_193989678.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACLHWB_RS08225 (ACLHWB_08225) cinA 1714308..1715558 (+) 1251 WP_193989625.1 competence/damage-inducible protein A Machinery gene
  ACLHWB_RS08230 (ACLHWB_08230) recA 1715668..1716717 (+) 1050 WP_126781650.1 recombinase RecA Machinery gene
  ACLHWB_RS08235 (ACLHWB_08235) rny 1717511..1719067 (+) 1557 WP_126781652.1 ribonuclease Y -
  ACLHWB_RS08240 (ACLHWB_08240) - 1719163..1719669 (+) 507 WP_193989626.1 LysM peptidoglycan-binding domain-containing protein -
  ACLHWB_RS08245 (ACLHWB_08245) - 1719686..1720327 (+) 642 WP_193989627.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44786.18 Da        Isoelectric Point: 4.5166

>NTDB_id=1085475 ACLHWB_RS08225 WP_193989625.1 1714308..1715558(+) (cinA) [Vagococcus salmoninarum strain 2022-03]
MKAEIIAVGTELLLGQVVNTNATFLSEELAGLGFEIYYQTVVGDNPERLVETLALAETRSQLIVLCGGLGPTDDDLTRDV
VAAHVGEQLVMDEASLAKILKYVSKIGHPMTENNKRQALSISGGQVIENPTGLAIGTLYQAETVNYLLLPGPPRELYPMF
HQKAKPLLAKLLPQDYHLTSRVLRFYGIGESRLVTELAELIASQSNPTIAPYAKPNEVTLRLTAKTKELSEAETLLDQME
NEIMASVGEYFYGYGEENSLVQETVKLLIAEEQTVTCAESLTAGMLQSALGSVPGVSAVFPGGYITYSDEGKTSLLGVPG
EVLTNHGAVSEACAIAMAEGARQKMGTDFGLSLTGVAGPTEVEGQKVGTVWIGIASKNQPTIAKEYFYQRDRETIRQSSV
MAALGLLRQEILAQKA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1085475 ACLHWB_RS08225 WP_193989625.1 1714308..1715558(+) (cinA) [Vagococcus salmoninarum strain 2022-03]
ATGAAAGCAGAAATAATTGCCGTTGGGACAGAGTTATTACTTGGTCAAGTAGTCAATACAAATGCGACGTTTCTATCTGA
AGAATTAGCCGGTCTTGGTTTTGAAATTTATTATCAAACTGTTGTGGGAGACAATCCGGAGCGATTAGTTGAAACTTTAG
CCCTAGCAGAAACTCGTAGTCAATTGATTGTCTTATGCGGTGGCTTAGGTCCTACCGATGATGATCTCACTCGTGATGTC
GTCGCAGCCCATGTCGGTGAACAATTGGTCATGGATGAGGCATCCTTGGCTAAAATCTTAAAATACGTCTCTAAAATTGG
TCACCCAATGACTGAAAACAATAAGCGCCAAGCTTTATCGATTAGTGGCGGTCAAGTCATTGAAAATCCTACTGGCTTAG
CAATTGGTACTTTATATCAAGCTGAAACAGTCAATTATTTATTATTGCCAGGCCCACCACGGGAGTTGTATCCGATGTTT
CACCAAAAGGCCAAACCATTACTAGCTAAACTCTTGCCTCAAGATTATCACTTGACCTCACGGGTTTTACGCTTTTACGG
CATTGGTGAATCCCGGTTAGTGACTGAGCTAGCCGAACTGATAGCTAGTCAAAGTAATCCAACGATTGCCCCCTACGCGA
AACCGAATGAAGTCACCTTGCGTTTAACGGCTAAAACGAAAGAGCTAAGTGAAGCTGAAACATTACTAGATCAAATGGAA
AATGAAATTATGGCAAGTGTCGGTGAGTACTTTTATGGCTATGGGGAAGAAAATAGCTTAGTCCAAGAAACAGTCAAGTT
GTTAATTGCCGAAGAACAGACAGTGACATGTGCTGAAAGCTTAACTGCAGGTATGCTTCAGAGCGCTTTAGGTAGCGTTC
CAGGGGTTTCAGCGGTCTTTCCTGGTGGATACATCACTTACAGTGACGAAGGGAAAACTAGCCTCTTAGGGGTCCCAGGG
GAAGTCTTAACAAATCATGGAGCAGTCAGTGAAGCTTGTGCCATTGCCATGGCTGAAGGGGCGCGTCAAAAGATGGGCAC
AGATTTTGGGCTATCTTTAACTGGAGTAGCAGGTCCAACTGAAGTTGAGGGCCAGAAAGTTGGCACAGTCTGGATTGGCA
TCGCCTCTAAGAATCAGCCGACGATTGCCAAAGAGTACTTTTATCAAAGAGATCGGGAGACAATTAGACAAAGTTCCGTC
ATGGCCGCATTAGGCTTATTACGGCAAGAAATCTTGGCTCAAAAAGCCTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

49.761

100

0.5
  cinA Streptococcus pneumoniae TIGR4

47.642

100

0.486
  cinA Streptococcus pneumoniae Rx1

47.406

100

0.483
  cinA Streptococcus pneumoniae R6

47.406

100

0.483
  cinA Streptococcus pneumoniae D39

47.17

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.17

100

0.481
  cinA Streptococcus mitis SK321

46.934

100

0.478
  cinA Bacillus subtilis subsp. subtilis str. 168

44.928

99.519

0.447
  cinA Streptococcus suis isolate S10

43.272

91.106

0.394

Multiple sequence alignment