Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACK1LH_RS14915 Genome accession   NZ_CP176757
Coordinates   2892748..2895123 (-) Length   791 a.a.
NCBI ID   WP_029279461.1    Uniprot ID   -
Organism   Metabacillus indicus strain JKLC.Or24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2887748..2900123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1LH_RS14900 (ACK1LH_14900) - 2890305..2891366 (-) 1062 WP_411333490.1 AI-2E family transporter -
  ACK1LH_RS14905 (ACK1LH_14905) - 2892039..2892230 (-) 192 WP_029279465.1 hypothetical protein -
  ACK1LH_RS14910 (ACK1LH_14910) - 2892245..2892745 (-) 501 WP_081414170.1 PRC-barrel domain-containing protein -
  ACK1LH_RS14915 (ACK1LH_14915) recD2 2892748..2895123 (-) 2376 WP_029279461.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACK1LH_RS14920 (ACK1LH_14920) - 2895139..2895792 (-) 654 WP_203288217.1 tetratricopeptide repeat protein -
  ACK1LH_RS14925 (ACK1LH_14925) mnmA 2895862..2896977 (-) 1116 WP_029279457.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACK1LH_RS14930 (ACK1LH_14930) - 2897001..2898140 (-) 1140 WP_029566758.1 cysteine desulfurase family protein -
  ACK1LH_RS14935 (ACK1LH_14935) cymR 2898155..2898571 (-) 417 WP_029279454.1 cysteine metabolism transcriptional regulator CymR -
  ACK1LH_RS14940 (ACK1LH_14940) - 2898590..2899255 (-) 666 WP_282032999.1 YczE/YyaS/YitT family protein -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89165.09 Da        Isoelectric Point: 4.9823

>NTDB_id=1082792 ACK1LH_RS14915 WP_029279461.1 2892748..2895123(-) (recD2) [Metabacillus indicus strain JKLC.Or24]
MQQQADLFQEQERFLKGKIITVIFQNEQNHYTVLKTEVLETSENIDQKEMTVTGYFPLLHEDETYTFFGMVTQHPKFGQQ
FQAEHYRKEIPKTRDGVIQYLSSDLFKGIGRKTAEAIVDELGEGAISKMMEDPSLLDKVPKLGKDKAKLLLDQLKEHQGL
EQAMIILNQLGFGPQLSMKIYQAYQDRTVQIIQENPFQLVKDIEGIGFVRADELGSRMGLGGNHPERIKAACFYTIEHLC
LQEGHTYVSTEQLIVKAMDLLNQSSDIRVIETDISAQIIKLAEDRGIIIEEDRTYLPSLYFAEQGLVKSIQRVLLQTEYD
SLFPESEFLLSLGNLEERMNVQYASSQKEAIQTALMSPMLLLTGGPGTGKTTVIKGIVELYADLHGCSLDPKDYKKEEPF
PISLVAPTGRAAKRMTEATGLPAVTIHRLLKWNGAEGFDHGEDNPIGAKLLIVDEMSMVDTWIAHQLFKALPEQIQVIMV
GDEDQLPSVGPGQVLRDLLESDAVPVVRLTDIYRQAEGSSIIELAHDIKKGRLPENLAAPTKDRSFIRCSGTQVKEVVEK
VIANAIKKGYTARDVQVLAPMYRGPAGIDQLNVMLQELFNPKSSGKREMKFGETVYRSGDKVLQLVNQPESNVYNGDIGE
IVSIFYAKENTEKEDMIVISFDGNEVTYTKSDFTQFTHAFCCSIHKSQGSEFPIVVVPVVKSYYRMLRRNLIYTAITRSK
QFLILCGEQDALLRGIENRDHLSRQTSLRMKLSQKQEEKQELESELPFGAADAMIGMEGITPYDFMEDSRI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=1082792 ACK1LH_RS14915 WP_029279461.1 2892748..2895123(-) (recD2) [Metabacillus indicus strain JKLC.Or24]
GTGCAGCAACAGGCGGATCTGTTTCAGGAACAGGAACGGTTTCTAAAAGGCAAAATCATCACGGTTATTTTTCAGAATGA
GCAGAATCATTACACCGTCCTGAAGACGGAGGTTCTTGAAACGAGCGAAAACATTGATCAAAAAGAGATGACCGTGACAG
GCTATTTTCCGCTTCTGCATGAAGATGAAACGTACACCTTCTTTGGGATGGTCACGCAGCATCCAAAATTCGGCCAGCAG
TTTCAGGCAGAGCACTACAGAAAAGAGATACCTAAAACGAGAGACGGGGTCATCCAGTATCTCTCAAGTGATCTTTTCAA
AGGTATTGGGAGAAAAACGGCCGAAGCCATTGTGGACGAGCTTGGAGAAGGAGCCATTTCAAAAATGATGGAGGATCCCT
CCCTTCTTGATAAGGTCCCGAAACTTGGCAAAGACAAGGCGAAACTGCTGCTCGATCAGCTGAAGGAGCACCAGGGACTT
GAACAGGCCATGATTATCCTGAACCAGCTCGGATTTGGCCCGCAGTTGTCCATGAAAATTTATCAGGCCTATCAGGACAG
AACGGTACAGATCATCCAGGAGAACCCGTTTCAGCTCGTAAAGGATATTGAAGGCATCGGGTTTGTGCGGGCAGATGAAC
TGGGAAGCCGCATGGGGCTTGGGGGAAACCATCCAGAGCGAATCAAAGCAGCCTGCTTTTACACGATTGAGCACCTTTGC
CTTCAGGAAGGCCATACATATGTTTCAACCGAACAGCTTATTGTAAAAGCAATGGATCTCCTGAATCAGTCCAGTGACAT
CAGAGTGATTGAAACAGATATTTCAGCACAGATTATTAAGCTGGCCGAAGACAGAGGCATCATCATTGAAGAGGACAGAA
CGTACTTGCCATCGCTCTATTTTGCGGAGCAGGGGCTTGTGAAAAGCATTCAACGGGTCCTTCTTCAAACGGAGTATGAC
AGTCTTTTTCCCGAGTCAGAGTTTCTCCTGTCACTTGGAAACCTGGAGGAACGGATGAACGTTCAGTATGCTTCCAGTCA
GAAAGAGGCTATTCAGACAGCCTTGATGTCGCCGATGCTTCTTCTTACAGGAGGACCCGGAACAGGAAAAACGACCGTGA
TCAAGGGGATTGTCGAGCTGTATGCCGATCTGCACGGGTGTTCTCTTGACCCAAAGGATTATAAAAAAGAAGAGCCTTTT
CCGATTTCATTGGTGGCGCCTACCGGACGTGCTGCAAAGCGGATGACAGAAGCGACGGGACTGCCTGCCGTCACGATTCA
CAGGCTGCTGAAATGGAACGGGGCAGAAGGCTTTGACCACGGCGAAGACAATCCGATCGGGGCCAAGCTCCTGATTGTCG
ATGAAATGTCCATGGTGGATACCTGGATTGCCCATCAGCTTTTTAAAGCCCTGCCTGAACAGATTCAGGTGATTATGGTA
GGGGATGAAGATCAGCTGCCTTCTGTTGGACCCGGCCAGGTTTTGCGTGATCTGCTTGAGTCGGATGCCGTTCCTGTCGT
GCGACTGACGGATATTTACAGACAGGCAGAAGGATCATCCATTATTGAGCTTGCCCATGATATTAAAAAAGGGAGGCTTC
CTGAAAACCTTGCCGCCCCGACGAAAGACCGTTCTTTTATCAGGTGCAGCGGCACGCAGGTAAAAGAAGTGGTGGAAAAG
GTTATTGCGAATGCTATTAAGAAAGGGTATACCGCACGCGATGTGCAGGTTCTTGCTCCTATGTACAGGGGTCCTGCAGG
CATAGACCAGCTGAACGTGATGCTGCAGGAGCTGTTCAATCCGAAATCCTCCGGCAAGCGTGAAATGAAGTTTGGAGAAA
CGGTGTACCGTTCAGGCGATAAAGTGCTTCAGCTCGTCAATCAGCCTGAAAGCAATGTGTACAACGGGGATATCGGGGAG
ATTGTCTCCATCTTTTATGCGAAGGAAAACACAGAAAAAGAAGATATGATCGTCATTTCCTTTGACGGTAATGAAGTGAC
GTATACAAAATCAGATTTTACTCAGTTTACTCACGCGTTCTGCTGCTCCATCCATAAATCCCAGGGCAGCGAATTTCCTA
TTGTGGTTGTGCCGGTTGTGAAGAGCTACTACCGGATGCTAAGGCGGAACCTTATTTATACGGCCATCACCCGAAGTAAG
CAGTTTCTGATTCTTTGCGGAGAGCAGGATGCGCTTCTCAGGGGTATCGAAAACCGCGATCATCTGAGCCGGCAGACGTC
CCTTCGCATGAAGCTGTCGCAAAAGCAGGAAGAAAAACAGGAGCTCGAGTCAGAGCTTCCATTCGGCGCGGCAGATGCCA
TGATCGGAATGGAAGGCATTACCCCGTATGACTTTATGGAAGACAGCAGAATCTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

AAA domain (AAA_30)

(343-550)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

68.507

100

0.69

Multiple sequence alignment