Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   UPTC5100_RS04845 Genome accession   NZ_CP176588
Coordinates   933999..934727 (-) Length   242 a.a.
NCBI ID   WP_258108477.1    Uniprot ID   -
Organism   Campylobacter lari strain M595a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 928999..939727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5100_RS04805 (UPTC5100_00951) holA 929667..930632 (+) 966 WP_258108474.1 DNA polymerase III subunit delta -
  UPTC5100_RS04810 (UPTC5100_00952) rpsF 930723..931097 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  UPTC5100_RS04815 (UPTC5100_00953) - 931101..931628 (+) 528 WP_047208374.1 single-stranded DNA-binding protein -
  UPTC5100_RS04820 (UPTC5100_00954) rpsR 931640..931900 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  UPTC5100_RS04825 (UPTC5100_00955) - 931952..932593 (+) 642 WP_047208375.1 MarC family protein -
  UPTC5100_RS04830 (UPTC5100_00956) - 932575..932997 (-) 423 WP_258108475.1 hypothetical protein -
  UPTC5100_RS04835 (UPTC5100_00957) - 932994..933722 (-) 729 WP_047208376.1 type II secretion system protein -
  UPTC5100_RS04840 (UPTC5100_00958) - 933706..934002 (-) 297 WP_258108476.1 hypothetical protein -
  UPTC5100_RS04845 (UPTC5100_00959) proC 933999..934727 (-) 729 WP_258108477.1 pyrroline-5-carboxylate reductase Machinery gene
  UPTC5100_RS04850 (UPTC5100_00960) fliW 934727..935122 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  UPTC5100_RS04855 (UPTC5100_00961) - 935299..935955 (+) 657 WP_258108478.1 outer membrane protein assembly factor BamD -
  UPTC5100_RS04860 (UPTC5100_00962) lon 935955..938333 (+) 2379 WP_258108479.1 endopeptidase La -
  UPTC5100_RS04865 (UPTC5100_00963) - 938349..939725 (-) 1377 WP_258108480.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26600.90 Da        Isoelectric Point: 7.6880

>NTDB_id=1081198 UPTC5100_RS04845 WP_258108477.1 933999..934727(-) (proC) [Campylobacter lari strain M595a]
MSEIYILGNGAMASAIAKGLKDTYKVVIVARDLKKASSLNLEVLSYKEFDLEDKNVILAFKPYALEEVAIKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDLYKDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGTFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1081198 UPTC5100_RS04845 WP_258108477.1 933999..934727(-) (proC) [Campylobacter lari strain M595a]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAGTGCTATAGCTAAAGGTTTGAAAGATACTTATAAAGTAGT
TATTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAGGTTTTATCTTATAAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCCTATGCTTTAGAAGAAGTAGCTATTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAACAACTTCATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTTATATAAAGATGAAATTTTATCTTTATTAAACA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGTTGCGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGCTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGTTATGAGCTTACTCG
CGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATCAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTACTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.996

98.76

0.583

Multiple sequence alignment