Detailed information NTG1080228

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: ACJ3Y0_RS01635
• Genome accession: NZ_CP176471
• Coordinates: 375708..377132 (+)
• Length: 474 a.a.
• NCBI ID: WP_372384312.1
• Uniprot ID: -
• Organism: Vibrio sp. BS-M-Sm-2
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 370708..382132

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJ3Y0_RS01620 (ACJ3Y0_01620)	-	373065..373775 (-)	711	WP_017090896.1	molecular chaperone	-
ACJ3Y0_RS01625 (ACJ3Y0_01625)	-	373772..374209 (-)	438	WP_372384311.1	DUF4402 domain-containing protein	-
ACJ3Y0_RS01630 (ACJ3Y0_01630)	-	374262..374696 (-)	435	WP_048611824.1	DUF4402 domain-containing protein	-
ACJ3Y0_RS01635 (ACJ3Y0_01635)	sbcB	375708..377132 (+)	1425	WP_372384312.1	exodeoxyribonuclease I	Machinery gene
ACJ3Y0_RS01640 (ACJ3Y0_01640)	-	377158..377529 (+)	372	WP_004734867.1	CidA/LrgA family protein	-
ACJ3Y0_RS01645 (ACJ3Y0_01645)	-	377532..378209 (+)	678	WP_004734865.1	LrgB family protein	-
ACJ3Y0_RS01650 (ACJ3Y0_01650)	cdd	378567..379454 (+)	888	WP_065676922.1	cytidine deaminase	-
ACJ3Y0_RS01655 (ACJ3Y0_01655)	purT	379622..380797 (+)	1176	WP_146491238.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
ACJ3Y0_RS01660 (ACJ3Y0_01660)	-	380914..381567 (-)	654	WP_146491239.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54602.82 Da
• Isoelectric Point: 4.8594

>NTDB_id=1080228 ACJ3Y0_RS01635 WP_372384312.1 375708..377132(+) (sbcB) [Vibrio sp. BS-M-Sm-2]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPDGINWPPNEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARNFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=1080228 ACJ3Y0_RS01635 WP_372384312.1 375708..377132(+) (sbcB) [Vibrio sp. BS-M-Sm-2]
ATGAGTTCAGATAATCAGCCGACCTACTTCTTTTTTGATTACGAAACGTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAGTTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGCCAACCTCCTGCTG
ATTACCTCCCTGCGCCTGAAGCTGCGTTGATCACCCGTATCACACCACAGAAAGCGGCTTCACAAGGTCTTCCTGAACCA
GAGTTTATCGCTAAGATCCATGCTGAGTTAGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATTCGATTCGATGA
TGAGGTAACGCGTTACACTTGTTACCGAAACTTCATCGACCCGTATGCGTGGAGCTGGCAGAACGGTAACTCACGTTGGG
ATCTACTCGATGTAATGCGCGCTGTTCACGCACTGCGCCCTGATGGTATCAACTGGCCACCAAATGAAGAAGGTTACCCA
AGTTTCAAACTGGAACATCTATCGGTGGCAAACGGTATTGAACATGAGAACGCGCACGATGCGATGGCAGATGTTATTGC
GACCATCGAACTGGCTAAGAAGTTAAAGGCCGCACAACCTAAGATGTTTGATTACCTCTACAACATGCGTCATAAGCGTA
AGCTGAATGACCTGGTTGATATTGTAAACATGACACCATTGATGCACGTTTCGGGCATGTTTGGCCGTGACTGCAACTAC
ACAAGTTGGATTGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCCGTTATCGTGGTTGATTTAGCCAAAGATCCAAG
CCCACTGTTAGAACTGGACGCTGATGAACTCAGAGACAGACTCTACACCAAACGCAGTGAACTGGGTGAAGACGAGCTAC
CCGTACCAATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCGCCAGCCAAAACACTGACGGCTGAAAATGCCGAA
ACCATCGGTATCGATCGCCAACAATGCTTAAAGAACCTAGCACTGCTTCGTGAACACCCAGAGATCCGCGAAAAACTGAT
CGGCCTCTACTCGCAAGAGCGTGAGTACGAGAAGAGTGATGATGTTGATACACACCTTTACGACGGTTTCTTTTCACCTG
CTGATAAAACAGCAATGAACATCATTCGCGAAACTGACCCAAATAACTTAGCAGCTTTGGATATCACCTTCAGTGACGAA
CGTATTAAACCGCTACTGTTCCGTTACCGTGCTCGAAATTTCCCATGGACGCTCGACGAAGCTGAACAATTGAAATGGGC
GAACCATTGTCGTGAATTTTATGAGAGCCGTTTAGAAGAGTACATGCTCAACCTTGAAAACCTCGCGCACGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAAGCGGTTTATCAATACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	75.949	100	0.759