Detailed information NTG1079509

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACKPXQ_RS08215
• Genome accession: NZ_CP176038
• Coordinates: 1637611..1638390 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain A4
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1632611..1643390

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKPXQ_RS08195 (ACKPXQ_08195)	trmFO	1633298..1634605 (+)	1308	WP_029973471.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACKPXQ_RS08200 (ACKPXQ_08200)	xerC	1634675..1635592 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACKPXQ_RS08205 (ACKPXQ_08205)	hslV	1635608..1636153 (+)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
ACKPXQ_RS08210 (ACKPXQ_08210)	hslU	1636170..1637573 (+)	1404	WP_007611413.1	HslU--HslV peptidase ATPase subunit	-
ACKPXQ_RS08215 (ACKPXQ_08215)	codY	1637611..1638390 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACKPXQ_RS08220 (ACKPXQ_08220)	flgB	1638744..1639133 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACKPXQ_RS08225 (ACKPXQ_08225)	flgC	1639133..1639585 (+)	453	WP_022553347.1	flagellar basal body rod protein FlgC	-
ACKPXQ_RS08230 (ACKPXQ_08230)	fliE	1639596..1639916 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACKPXQ_RS08235 (ACKPXQ_08235)	fliF	1639959..1641569 (+)	1611	WP_022553346.1	flagellar basal-body MS-ring/collar protein FliF	-
ACKPXQ_RS08240 (ACKPXQ_08240)	fliG	1641582..1642598 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACKPXQ_RS08245 (ACKPXQ_08245)	fliH	1642591..1643346 (+)	756	WP_022553345.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1079509 ACKPXQ_RS08215 WP_003154263.1 1637611..1638390(+) (codY) [Bacillus velezensis strain A4]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1079509 ACKPXQ_RS08215 WP_003154263.1 1637611..1638390(+) (codY) [Bacillus velezensis strain A4]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAACTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471