Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACCH06_RS05755 Genome accession   NZ_CP174157
Coordinates   1182652..1183227 (+) Length   191 a.a.
NCBI ID   WP_010788160.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1177652..1188227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS05730 - 1178081..1178596 (-) 516 WP_406590168.1 methyl-accepting chemotaxis protein -
  ACCH06_RS05735 - 1178885..1179262 (-) 378 Protein_1073 protoglobin domain-containing protein -
  ACCH06_RS05740 - 1179538..1181130 (-) 1593 WP_406589850.1 FAD-dependent oxidoreductase -
  ACCH06_RS05745 - 1181204..1182061 (+) 858 WP_003327697.1 SDR family oxidoreductase -
  ACCH06_RS05750 - 1182092..1182325 (-) 234 WP_003327696.1 IDEAL domain-containing protein -
  ACCH06_RS05755 comK 1182652..1183227 (+) 576 WP_010788160.1 competence protein ComK Regulator
  ACCH06_RS05760 - 1183445..1183717 (+) 273 WP_003327694.1 excalibur calcium-binding domain-containing protein -
  ACCH06_RS05765 - 1183745..1185232 (-) 1488 WP_406589851.1 sodium:solute symporter -
  ACCH06_RS05770 - 1185229..1185429 (-) 201 WP_406589852.1 DUF3311 domain-containing protein -
  ACCH06_RS05775 - 1185554..1185919 (-) 366 WP_003327690.1 hypothetical protein -
  ACCH06_RS05780 - 1186074..1186697 (+) 624 WP_010788162.1 TVP38/TMEM64 family protein -
  ACCH06_RS05785 lepB 1186700..1187200 (+) 501 WP_406589853.1 signal peptidase I -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22264.48 Da        Isoelectric Point: 8.1215

>NTDB_id=1074654 ACCH06_RS05755 WP_010788160.1 1182652..1183227(+) (comK) [Bacillus atrophaeus strain SHZ-24]
MSQKTDAPLDTYEVNSSTIAVLPEPMNGKMYSKIIEKDCTFYVSMKPLQIVDRSCRYFGSSYAGRKAGTYEVINISHKPP
IMVDLSNHIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTAVTFSNGKTMELPVSCNSFENQVYRTAWLRTKFQDRVEH
APKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1074654 ACCH06_RS05755 WP_010788160.1 1182652..1183227(+) (comK) [Bacillus atrophaeus strain SHZ-24]
ATGAGTCAGAAAACTGACGCACCCCTAGACACCTACGAAGTAAACAGCTCAACAATCGCCGTATTGCCCGAACCGATGAA
CGGGAAAATGTACTCAAAGATCATTGAAAAGGACTGCACGTTTTATGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGTTACTTTGGCTCAAGTTATGCGGGAAGAAAAGCGGGAACCTATGAAGTGATTAACATTTCTCACAAGCCGCCG
ATCATGGTGGACCTTTCCAACCATATCTTTTTATTCCCTACACTTTCTTCAACAAGACCCCAATGCGGCTGGATTTCACA
CGTGCATGTAAAAGAATTTAAAGCCACGGAATTCGACGATACAGCTGTGACCTTTTCCAATGGAAAAACAATGGAGCTCC
CGGTCTCCTGCAATTCGTTCGAAAACCAGGTCTACCGCACGGCATGGCTCAGAACAAAATTCCAAGACCGGGTCGAACAC
GCGCCAAAACGGCAGGAATTCATGCTGTACCCGAAGGAAGAACGCACGCGGATGATTTATGATTTTATTTTGCGCGAGCT
GGGCGAGCGGTACTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

87.5

100

0.88

Multiple sequence alignment