Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACIFYW_RS00905 Genome accession   NZ_CP173026
Coordinates   187913..188773 (-) Length   286 a.a.
NCBI ID   WP_404272682.1    Uniprot ID   -
Organism   Vibrio cholerae strain SPH 24-01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182913..193773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIFYW_RS00875 (ACIFYW_00875) gspL 183171..184382 (+) 1212 WP_032476949.1 type II secretion system protein GspL -
  ACIFYW_RS00880 (ACIFYW_00880) - 184392..184889 (+) 498 WP_000661347.1 type II secretion system protein M -
  ACIFYW_RS00885 (ACIFYW_00885) - 184891..185649 (+) 759 WP_000817150.1 type II secretion system protein N -
  ACIFYW_RS00890 (ACIFYW_00890) cysQ 185701..186528 (-) 828 WP_404272681.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACIFYW_RS00895 (ACIFYW_00895) nudE 186551..187099 (-) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  ACIFYW_RS00900 (ACIFYW_00900) nfuA 187238..187825 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  ACIFYW_RS00905 (ACIFYW_00905) comF 187913..188773 (-) 861 WP_404272682.1 phosphoribosyltransferase family protein Machinery gene
  ACIFYW_RS00910 (ACIFYW_00910) bioH 188709..189470 (+) 762 WP_001240449.1 pimeloyl-ACP methyl ester esterase BioH -
  ACIFYW_RS00915 (ACIFYW_00915) - 189632..190102 (+) 471 WP_000961393.1 hypothetical protein -
  ACIFYW_RS00920 (ACIFYW_00920) - 190197..192518 (-) 2322 WP_095490211.1 Tex family protein -
  ACIFYW_RS00925 (ACIFYW_00925) greB 192761..193243 (+) 483 WP_404272683.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32546.48 Da        Isoelectric Point: 8.1633

>NTDB_id=1070019 ACIFYW_RS00905 WP_404272682.1 187913..188773(-) (comF) [Vibrio cholerae strain SPH 24-01]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLERGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1070019 ACIFYW_RS00905 WP_404272682.1 187913..188773(-) (comF) [Vibrio cholerae strain SPH 24-01]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGTCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCGCGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
TGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCTTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTAACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGTACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.951

100

0.99
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388

Multiple sequence alignment