Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACHWYH_RS05730 Genome accession   NZ_CP172084
Coordinates   1156302..1156994 (-) Length   230 a.a.
NCBI ID   WP_112103479.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA81666     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1151302..1161994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYH_RS05700 - 1153154..1153360 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  ACHWYH_RS05705 - 1153446..1153652 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  ACHWYH_RS05710 - 1153738..1153944 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  ACHWYH_RS05715 cueR 1154021..1154407 (+) 387 WP_005648963.1 Cu(I)-responsive transcriptional regulator -
  ACHWYH_RS05720 metJ 1154421..1154738 (-) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  ACHWYH_RS05725 rho 1154986..1156248 (+) 1263 WP_005648966.1 transcription termination factor Rho -
  ACHWYH_RS05730 pilD 1156302..1156994 (-) 693 WP_112103479.1 A24 family peptidase Machinery gene
  ACHWYH_RS05735 pilC 1156991..1158211 (-) 1221 WP_112103478.1 type II secretion system F family protein Machinery gene
  ACHWYH_RS05740 pilB 1158208..1159602 (-) 1395 WP_112103477.1 GspE/PulE family protein Machinery gene
  ACHWYH_RS05745 pilA 1159599..1160048 (-) 450 WP_110426612.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACHWYH_RS05750 ampD 1160163..1160723 (+) 561 WP_112103476.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26809.85 Da        Isoelectric Point: 9.3065

>NTDB_id=1065047 ACHWYH_RS05730 WP_112103479.1 1156302..1156994(-) (pilD) [Haemophilus influenzae strain GA81666]
MIYFTMFLLGGILGIALWFYLSGFITRLQQEIYATYVELFPQNRSPFQPHFASIQQKKCGHILRYFFSIGVGFIFLQIAF
KDSIFTVWIGLTLIILWTISYLDWHYQLISTTPCLWLLTLGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWIAKCYYR
KEAFGRGDYWLAMALGSFIRLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYGY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=1065047 ACHWYH_RS05730 WP_112103479.1 1156302..1156994(-) (pilD) [Haemophilus influenzae strain GA81666]
ATGATTTACTTCACAATGTTTTTATTAGGCGGTATCTTAGGGATTGCATTGTGGTTCTATCTATCTGGTTTTATTACACG
TTTACAGCAAGAGATTTATGCGACTTACGTTGAATTATTTCCACAAAACCGTTCTCCATTTCAACCGCACTTTGCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTTAGTATTGGAGTTGGATTTATATTTTTACAAATTGCCTTC
AAAGATTCTATTTTTACTGTATGGATCGGACTCACACTTATTATTCTTTGGACAATCAGTTATCTTGATTGGCACTATCA
ACTTATTTCTACGACACCCTGTTTATGGTTACTTACTCTAGGATTATTTGGAGCAGACAATAACTTTTCATTGCTAACGT
TATCTGAAAGCATAAAAAGTGCGGCTAGTTTTTTTATTGTTTTCTACGCAATCTATTGGATTGCAAAATGTTATTACAGA
AAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCGTTTAGAAACCTTACCGCACTT
TTTATTATTAGCCTCAGTGCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCCCTT
TTATGAACTTATCAGCTGTCATCATTTATTTCGTCAAATATTACGGATATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

97.826

100

0.978
  pilD Haemophilus influenzae Rd KW20

96.087

100

0.961

Multiple sequence alignment