Detailed information NTG1061675

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8JL_RS11680
• Genome accession: NZ_CP171501
• Coordinates: 2396440..2397240 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP35_UID2108280031
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2391440..2402240

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8JL_RS11660	dksA	2392020..2392475 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACF8JL_RS11665	sfsA	2392638..2393354 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACF8JL_RS11670	thpR	2393354..2393890 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8JL_RS11675	hrpB	2393963..2396392 (+)	2430	WP_004222692.1	ATP-dependent helicase HrpB	-
ACF8JL_RS11680	pilD	2396440..2397240 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACF8JL_RS11685	-	2397237..2397983 (-)	747	WP_004145897.1	type II secretion system protein N	-
ACF8JL_RS11690	-	2397973..2398458 (-)	486	WP_004151943.1	type II secretion system protein M	-
ACF8JL_RS11695	gspL	2398451..2399644 (-)	1194	WP_004191957.1	type II secretion system protein GspL	-
ACF8JL_RS11700	gspK	2399631..2400617 (-)	987	WP_004222697.1	type II secretion system minor pseudopilin GspK	-
ACF8JL_RS11705	gspJ	2400614..2401210 (-)	597	WP_004222700.1	type II secretion system minor pseudopilin GspJ	-
ACF8JL_RS11710	gspI	2401207..2401572 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8JL_RS11715	gspH	2401569..2402084 (-)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061675 ACF8JL_RS11680 WP_004145898.1 2396440..2397240(-) (pilD) [Klebsiella pneumoniae strain KP35_UID2108280031]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1061675 ACF8JL_RS11680 WP_004145898.1 2396440..2397240(-) (pilD) [Klebsiella pneumoniae strain KP35_UID2108280031]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGTCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425