Detailed information NTG1060828

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACE1MM_RS01860
• Genome accession: NZ_CP171355
• Coordinates: 382663..383544 (-)
• Length: 293 a.a.
• NCBI ID: WP_062737997.1
• Uniprot ID: A0AAJ4ZND8
• Organism: Ralstonia mannitolilytica strain SY001
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 377663..388544

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACE1MM_RS01830 (ACE1MM_01830)	argJ	378355..379584 (+)	1230	WP_045785936.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
ACE1MM_RS01835 (ACE1MM_01835)	-	379601..380485 (+)	885	WP_045785937.1	ATP-binding protein	-
ACE1MM_RS01840 (ACE1MM_01840)	-	380475..380924 (+)	450	WP_045785938.1	NUDIX domain-containing protein	-
ACE1MM_RS01845 (ACE1MM_01845)	yacG	380928..381134 (-)	207	WP_045785939.1	DNA gyrase inhibitor YacG	-
ACE1MM_RS01850 (ACE1MM_01850)	zapD	381143..381901 (-)	759	WP_062737999.1	cell division protein ZapD	-
ACE1MM_RS01855 (ACE1MM_01855)	coaE	382036..382650 (-)	615	WP_062737998.1	dephospho-CoA kinase	-
ACE1MM_RS01860 (ACE1MM_01860)	pilD	382663..383544 (-)	882	WP_062737997.1	A24 family peptidase	Machinery gene
ACE1MM_RS01865 (ACE1MM_01865)	pilG	383544..384809 (-)	1266	WP_062737996.1	type II secretion system F family protein	Machinery gene
ACE1MM_RS01870 (ACE1MM_01870)	pilB	384854..386581 (-)	1728	WP_045785944.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACE1MM_RS01875 (ACE1MM_01875)	-	386831..388105 (-)	1275	WP_045785945.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31707.58 Da
• Isoelectric Point: 6.9396

>NTDB_id=1060828 ACE1MM_RS01860 WP_062737997.1 382663..383544(-) (pilD) [Ralstonia mannitolilytica strain SY001]
MPDMFVISTLAQLPAWFVIGSGALVGLLVGSFLNVVIHRLPRMIEREEANYIAELREEPLPHPETYNLVVPRSACPSCGH
QIRALENVPVLSWLALRGRCSACKTPISWRYPAVEFVTGLLTAACLWHFGPTWVAVASAVLLWFLIAGTMIDADTQLLPD
AITQPLLWLGLGVNLFGMFAHLDDAVIGAMAGYLFLWSIYWAYKLLRGREGMGYGDFKLMAALGAWFGWQALPLLVLLSS
VVGLVFGLVRIARGAKSESPFSFGPFIAGAGAIALLAGPQLLVMAGFGPLLGP

Nucleotide

• Length: 882 bp

>NTDB_id=1060828 ACE1MM_RS01860 WP_062737997.1 382663..383544(-) (pilD) [Ralstonia mannitolilytica strain SY001]
ATGCCCGACATGTTTGTCATCTCCACGCTGGCGCAATTGCCGGCGTGGTTCGTGATCGGGTCCGGCGCGCTGGTCGGCCT
GCTGGTCGGCAGCTTCCTCAACGTGGTGATTCACCGGCTCCCGCGCATGATCGAGCGCGAAGAAGCGAACTACATCGCTG
AACTGCGCGAAGAACCACTGCCACACCCCGAGACCTACAACCTGGTCGTGCCGCGCTCGGCGTGCCCGTCGTGCGGCCAC
CAGATCAGGGCGCTCGAGAACGTCCCCGTCTTGAGCTGGCTCGCGCTGCGCGGCCGGTGCAGCGCATGCAAGACGCCTAT
CTCGTGGCGATACCCCGCCGTGGAATTCGTCACGGGCCTGCTGACCGCGGCTTGCCTGTGGCATTTTGGTCCGACCTGGG
TGGCGGTGGCGTCGGCGGTGCTGCTGTGGTTCCTGATTGCCGGCACGATGATCGATGCCGACACCCAGCTGTTGCCCGAC
GCCATCACGCAGCCGCTGCTTTGGCTCGGCCTGGGGGTGAATCTGTTCGGCATGTTTGCGCACCTGGATGACGCCGTGAT
CGGGGCGATGGCCGGCTACCTCTTCCTGTGGTCCATCTACTGGGCCTACAAGCTGCTGCGCGGCCGCGAAGGCATGGGCT
ACGGCGACTTCAAGCTGATGGCCGCGCTCGGCGCGTGGTTCGGTTGGCAGGCGCTGCCGCTCCTGGTGCTGCTGTCATCG
GTGGTGGGCCTGGTTTTCGGGCTGGTGCGCATCGCGCGCGGCGCCAAGAGCGAATCGCCGTTCTCGTTCGGGCCGTTCAT
TGCAGGGGCCGGCGCGATCGCCCTGCTGGCCGGGCCGCAGTTGCTCGTGATGGCCGGGTTCGGGCCGCTGCTCGGGCCGT
AA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (24-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.094	90.444	0.498
pilD	Vibrio campbellii strain DS40M4	50.542	94.539	0.478
pilD	Neisseria gonorrhoeae MS11	47.535	96.928	0.461
pilD	Acinetobacter nosocomialis M2	48.473	89.42	0.433
pilD	Acinetobacter baumannii D1279779	48.473	89.42	0.433