Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V6M93_RS12355 Genome accession   NZ_CP170503
Coordinates   2790343..2791869 (-) Length   508 a.a.
NCBI ID   WP_014916972.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain BSRLOP2CAB     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2785343..2796869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6M93_RS12330 (V6M93_12330) ytfR 2785498..2787015 (+) 1518 WP_040034473.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  V6M93_RS12335 (V6M93_12335) ytfT 2787005..2788015 (+) 1011 WP_010283927.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  V6M93_RS12340 (V6M93_12340) yjfF 2788015..2788977 (+) 963 WP_010294682.1 galactofuranose ABC transporter, permease protein YjfF -
  V6M93_RS12345 (V6M93_12345) hdfR 2788999..2789826 (-) 828 WP_010294681.1 HTH-type transcriptional regulator HdfR -
  V6M93_RS12350 (V6M93_12350) - 2789947..2790285 (+) 339 WP_010283921.1 DUF413 domain-containing protein -
  V6M93_RS12355 (V6M93_12355) comM 2790343..2791869 (-) 1527 WP_014916972.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V6M93_RS12360 (V6M93_12360) ilvL 2792277..2792375 (+) 99 WP_071531109.1 ilv operon leader peptide -
  V6M93_RS12365 (V6M93_12365) ilvG 2792516..2794162 (+) 1647 WP_379057315.1 acetolactate synthase 2 catalytic subunit -
  V6M93_RS12370 (V6M93_12370) ilvM 2794220..2794480 (+) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  V6M93_RS12375 (V6M93_12375) - 2794505..2795431 (+) 927 WP_379057317.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55498.18 Da        Isoelectric Point: 6.6907

>NTDB_id=1057806 V6M93_RS12355 WP_014916972.1 2790343..2791869(-) (comM) [Pectobacterium brasiliense strain BSRLOP2CAB]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGGRD
NIERKHLAEALSYRCMDRLLIQLHKNLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1057806 V6M93_RS12355 WP_014916972.1 2790343..2791869(-) (comM) [Pectobacterium brasiliense strain BSRLOP2CAB]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCATATCAGCAG
CGGGCTACCAGCCCTAACGCTGGTGGGCTTACCAGAAACCACCGTCAAGGAAGCGCGTGATCGCGTGCGCAGCGCTCTCA
TCAATTGCGGATTTACGTTTCCGGCGAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGAGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAGAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGTCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCTGCATTGGAAGCCATCAAATCAGGCC
GCCAGCTTATCCTTCCAGATGACAATAAACGGGAGATGACCCTGATACCGCAGGGTGAAGCGCTAATGGCTGGGCATTTG
TTGGATGTGTGTGCTTTTCTCAGTGGAGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACCGATCGAGGA
AGATACGCTCGATCTGAAGGATATCATCGGTCAGGAACAGGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGCCACA
ACTTGCTATTGCTAGGGCCTCCGGGAACGGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCGCTGGAAAGTGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGACC
ATTCAGAGCGCCTCACCATAGTTCTTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTGCCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGTGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTACTGGACTCACTACGAGAGCCTCTG
GAATCTGGGGAAATTATCATTTCCCGCACTAGGGCTAAAGTGTGCTATCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
TCCCAGCCCCTCAGGACACTATCAGGGTGTTCATAACCGGTTGCCGGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTGCTACCACCAGGGGTTTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACAATTCGTGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTACTCACTTCACGTGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATCTTGAAAGTCGCGCGCACGATCGCTGACCTCGGCGGTCGGGAT
AATATTGAAAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGCTTGCTCATCCAGCTCCACAAAAACCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.229

99.606

0.64
  comM Vibrio cholerae strain A1552

64.215

99.016

0.636
  comM Glaesserella parasuis strain SC1401

63.261

100

0.634
  comM Vibrio campbellii strain DS40M4

62.846

99.606

0.626
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.214

100

0.469

Multiple sequence alignment