Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BCV20_RS00980 Genome accession   NZ_CP170007
Coordinates   219981..220613 (-) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio cyclitrophicus strain 10N.286.54.F4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 214981..225613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV20_RS00965 (BCV20_00965) astA 216284..217303 (+) 1020 WP_016788476.1 arginine N-succinyltransferase -
  BCV20_RS00970 (BCV20_00970) astD 217343..218800 (+) 1458 WP_010435219.1 succinylglutamate-semialdehyde dehydrogenase -
  BCV20_RS00975 (BCV20_00975) - 219012..219803 (+) 792 WP_016788477.1 DUF1338 domain-containing protein -
  BCV20_RS00980 (BCV20_00980) crp 219981..220613 (-) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  BCV20_RS00985 (BCV20_00985) - 220853..221722 (-) 870 WP_010435210.1 phosphoribulokinase -
  BCV20_RS00990 (BCV20_00990) - 221800..222012 (-) 213 WP_010435208.1 YheU family protein -
  BCV20_RS00995 (BCV20_00995) - 222104..223111 (-) 1008 WP_016783703.1 hydrolase -
  BCV20_RS01000 (BCV20_01000) - 223383..223853 (-) 471 WP_010435202.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=1054362 BCV20_RS00980 WP_004729651.1 219981..220613(-) (crp) [Vibrio cyclitrophicus strain 10N.286.54.F4]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1054362 BCV20_RS00980 WP_004729651.1 219981..220613(-) (crp) [Vibrio cyclitrophicus strain 10N.286.54.F4]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATTGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTAGGCTTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGACATCCTAATGCGTCTATCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAAGTTGGTG
ACTTAGCGTTCCTTGACGTAACTGGTCGTATCGCACAAACGCTACTAAACCTAGCAAAACAACCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGCCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTTGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATATGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment