Detailed information NTG1052657

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACE3MO_RS22165
• Genome accession: NZ_CP169719
• Coordinates: 4750762..4751559 (+)
• Length: 265 a.a.
• NCBI ID: WP_017144963.1
• Uniprot ID: -
• Organism: Klebsiella oxytoca strain 3238
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4745762..4756559

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACE3MO_RS22130 (ACE3MO_22130)	gspH	4745900..4746412 (+)	513	WP_004110670.1	type II secretion system minor pseudopilin GspH	-
ACE3MO_RS22135 (ACE3MO_22135)	gspI	4746409..4746774 (+)	366	WP_004110668.1	type II secretion system minor pseudopilin GspI	-
ACE3MO_RS22140 (ACE3MO_22140)	gspJ	4746771..4747367 (+)	597	WP_202862077.1	type II secretion system minor pseudopilin GspJ	-
ACE3MO_RS22145 (ACE3MO_22145)	gspK	4747364..4748344 (+)	981	WP_202862078.1	type II secretion system minor pseudopilin GspK	-
ACE3MO_RS22150 (ACE3MO_22150)	gspL	4748337..4749533 (+)	1197	WP_017144961.1	type II secretion system protein GspL	-
ACE3MO_RS22155 (ACE3MO_22155)	gspM	4749526..4750011 (+)	486	WP_016808874.1	type II secretion system protein GspM	-
ACE3MO_RS22160 (ACE3MO_22160)	-	4750001..4750759 (+)	759	WP_017144962.1	type II secretion system protein N	-
ACE3MO_RS22165 (ACE3MO_22165)	pilD	4750762..4751559 (+)	798	WP_017144963.1	A24 family peptidase	Machinery gene
ACE3MO_RS22170 (ACE3MO_22170)	hrpB	4751656..4754085 (-)	2430	WP_202862079.1	ATP-dependent helicase HrpB	-
ACE3MO_RS22175 (ACE3MO_22175)	thpR	4754158..4754694 (+)	537	WP_004108002.1	RNA 2',3'-cyclic phosphodiesterase	-
ACE3MO_RS22180 (ACE3MO_22180)	sfsA	4754694..4755410 (+)	717	WP_004108004.1	DNA/RNA nuclease SfsA	-
ACE3MO_RS22185 (ACE3MO_22185)	dksA	4755575..4756030 (+)	456	WP_004098689.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29249.05 Da
• Isoelectric Point: 8.6282

>NTDB_id=1052657 ACE3MO_RS22165 WP_017144963.1 4750762..4751559(+) (pilD) [Klebsiella oxytoca strain 3238]
MENIALLPEFAAQFPLIWGGFLFLSGLAFGSFFNVVIHRLPLMMEYTEGVNLCFPASFCPRCRQPIAWRDNIPLLSFLWL
KGRSRCCGRPISRRYPLMELATGALFMLVGYLIPAGMPLLGGLILLSLLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLT
DLFAPLAEAVVGAMAGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQALPHTLLLASASGLIWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWGQV

Nucleotide

• Length: 798 bp

>NTDB_id=1052657 ACE3MO_RS22165 WP_017144963.1 4750762..4751559(+) (pilD) [Klebsiella oxytoca strain 3238]
GTGGAAAACATCGCATTGTTACCCGAGTTCGCCGCGCAATTCCCGTTAATCTGGGGCGGTTTTTTATTCTTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAGTACACAGAGGGAGTGAATCTCTGCT
TCCCCGCATCATTCTGTCCGCGGTGCCGTCAGCCCATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AAGGGGCGTTCGCGCTGCTGCGGGCGACCGATTTCACGTCGCTATCCGCTGATGGAGCTGGCGACCGGCGCGCTGTTTAT
GCTGGTCGGGTACCTGATCCCTGCGGGCATGCCGCTGCTAGGGGGGTTAATTTTATTGTCGCTGCTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACTCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTACC
GATCTCTTCGCGCCGCTGGCGGAGGCGGTCGTTGGCGCGATGGCCGGGTATCTATCGCTGTGGTCAGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGTGATTTCAAGCTGCTGGCGGCGCTCGGCGCGTGGCTCGGCTGGC
AGGCGCTGCCGCATACGCTGCTGCTGGCTTCCGCCAGCGGCCTGATCTGGACGCTACTGCAGCGCCTGGTAACCCGTCGC
TCGCTCGAACAGCCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGGGCCAGGTATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-110)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.042	98.491	0.483
pilD	Neisseria gonorrhoeae MS11	44.964	100	0.472
pilD	Vibrio campbellii strain DS40M4	43.478	100	0.453
pilD	Acinetobacter nosocomialis M2	45.174	97.736	0.442
pilD	Acinetobacter baumannii D1279779	44.788	97.736	0.438