Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8616_RS05540 Genome accession   NZ_AP028382
Coordinates   1108868..1109314 (-) Length   148 a.a.
NCBI ID   WP_002776437.1    Uniprot ID   A0A0Q2LSM9
Organism   Campylobacter coli strain BCH-11051     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1103868..1114314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8616_RS05525 (B11051_10840) flgH 1105118..1105816 (+) 699 WP_002787400.1 flagellar basal body L-ring protein FlgH -
  R8616_RS05530 (B11051_10850) ispG 1105900..1106973 (-) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  R8616_RS05535 (B11051_10860) - 1107033..1108871 (-) 1839 WP_002776439.1 primosomal protein N' -
  R8616_RS05540 (B11051_10870) Cj0683 1108868..1109314 (-) 447 WP_002776437.1 type II secretion system protein Machinery gene
  R8616_RS05545 (B11051_10880) - 1109311..1109556 (-) 246 WP_002776428.1 hypothetical protein -
  R8616_RS05550 (B11051_10890) - 1109546..1109776 (-) 231 WP_002776426.1 hypothetical protein -
  R8616_RS05555 (B11051_10900) uvrB 1109930..1111903 (+) 1974 WP_002844764.1 excinuclease ABC subunit UvrB -
  R8616_RS05560 (B11051_10910) - 1111938..1113362 (-) 1425 WP_317649440.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17302.19 Da        Isoelectric Point: 8.4538

>NTDB_id=105152 R8616_RS05540 WP_002776437.1 1108868..1109314(-) (Cj0683) [Campylobacter coli strain BCH-11051]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=105152 R8616_RS05540 WP_002776437.1 1108868..1109314(-) (Cj0683) [Campylobacter coli strain BCH-11051]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2LSM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.108

100

0.581

Multiple sequence alignment