Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8617_RS07440 Genome accession   NZ_AP028362
Coordinates   1449551..1449862 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain BCH-10611     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1444551..1454862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8617_RS07420 (B10611_14720) ctsE 1445420..1446979 (-) 1560 WP_002867246.1 GspE/PulE family protein Machinery gene
  R8617_RS07425 (B10611_14730) ctsX 1446969..1447556 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  R8617_RS07430 (B10611_14740) ctsP 1447560..1448168 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8617_RS07435 (B10611_14750) ctsD 1448161..1449573 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8617_RS07440 (B10611_14760) ctsR 1449551..1449862 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  R8617_RS07445 (B10611_14770) nifJ 1449886..1453446 (-) 3561 WP_002867243.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8617_RS07450 (B10611_14780) - 1453539..1454180 (-) 642 WP_002867242.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=104847 R8617_RS07440 WP_002855438.1 1449551..1449862(-) (ctsR) [Campylobacter jejuni strain BCH-10611]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=104847 R8617_RS07440 WP_002855438.1 1449551..1449862(-) (ctsR) [Campylobacter jejuni strain BCH-10611]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment