Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   NTHI477_RS03795 Genome accession   NZ_CP007470
Coordinates   799099..799611 (-) Length   170 a.a.
NCBI ID   WP_044330935.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 477     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 794099..804611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHI477_RS03780 (NTHI477_00767) comQ 797405..797692 (-) 288 WP_044330926.1 DUF5374 domain-containing protein Machinery gene
  NTHI477_RS03785 (NTHI477_00768) comP 797685..798368 (-) 684 WP_044330929.1 DUF2572 family protein Machinery gene
  NTHI477_RS03790 (NTHI477_00769) comO 798383..799099 (-) 717 WP_044330932.1 PulJ/GspJ family protein Machinery gene
  NTHI477_RS03795 (NTHI477_00770) comN 799099..799611 (-) 513 WP_044330935.1 pilus assembly FimT family protein Machinery gene
  NTHI477_RS03800 (NTHI477_00771) suhB 799811..800614 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  NTHI477_RS03805 (NTHI477_00772) nrfE 800723..802630 (+) 1908 WP_042593717.1 heme lyase NrfEFG subunit NrfE -
  NTHI477_RS03810 (NTHI477_00773) - 802630..803160 (+) 531 WP_005688388.1 DsbE family thiol:disulfide interchange protein -
  NTHI477_RS03815 (NTHI477_00774) nrfF 803157..804299 (+) 1143 WP_005688390.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19878.14 Da        Isoelectric Point: 8.7271

>NTDB_id=104622 NTHI477_RS03795 WP_044330935.1 799099..799611(-) (comN) [Haemophilus influenzae strain 477]
MQKGMTLVELLIGLAIISIVLSFVVPLWQTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=104622 NTHI477_RS03795 WP_044330935.1 799099..799611(-) (comN) [Haemophilus influenzae strain 477]
ATGCAGAAAGGTATGACATTAGTGGAATTATTAATTGGGTTAGCCATTATCAGCATTGTGCTGAGTTTTGTCGTGCCATT
ATGGCAAACCGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCTTGTATTTATTTCTACGACAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGGAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGTCCAAAAGAGGTTTATGCGCATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGTAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

97.059

100

0.971