Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACCB35_RS15420 Genome accession   NZ_CP168654
Coordinates   3037163..3039526 (-) Length   787 a.a.
NCBI ID   WP_374054384.1    Uniprot ID   -
Organism   Rossellomorea sp. FM04394     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3032163..3044526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCB35_RS15405 dtd 3033728..3034168 (-) 441 WP_374054383.1 D-aminoacyl-tRNA deacylase -
  ACCB35_RS15410 - 3034183..3036372 (-) 2190 WP_044339543.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ACCB35_RS15415 - 3036660..3037172 (-) 513 WP_044339542.1 adenine phosphoribosyltransferase -
  ACCB35_RS15420 recJ 3037163..3039526 (-) 2364 WP_374054384.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACCB35_RS15425 - 3039648..3039983 (-) 336 WP_374054385.1 lipopolysaccharide assembly LapA domain-containing protein -
  ACCB35_RS15430 - 3039997..3040881 (-) 885 WP_374057042.1 cation diffusion facilitator family transporter -
  ACCB35_RS15435 secDF 3041027..3043291 (-) 2265 WP_374054386.1 protein translocase subunit SecDF -
  ACCB35_RS15440 - 3043421..3043741 (-) 321 WP_044339537.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88811.92 Da        Isoelectric Point: 4.7526

>NTDB_id=1044782 ACCB35_RS15420 WP_374054384.1 3037163..3039526(-) (recJ) [Rossellomorea sp. FM04394]
MLNSKTRWLMTESDQHKISELANELKVPSLVAKLLINRDLDDVEEARNFLFDTGDSFHDPFLFEDMKKATERIHKAIENG
ERILVYGDYDADGVSSTSVLMTVLRDLGADVEFYIPNRFSEGYGPNEGAFRWAKDEEFTLIITVDTGISAVNEARLAKEL
EIDLIITDHHEPGPELPPAFALIHPKVEGTTYPFGELAGVGVAFKLAHALYGELPVHLLDLAAIGTIADLVPLRGENRLL
AKRGIENLRVSNRLGIKALCRIANSHQHEITEESIGFMIAPRINAVGRLGDADPAVDLMLTEDAEEAKALAEEIDSLNKE
RQAIVSQMTEEAVEMVENDFPLNDNRALVIGKEGWNPGVVGIVASRLVDKFYRPTIVLSYDSEKGTAKGSARSIAGFDLF
KNLSTCRDILPHFGGHPMAAGMTLQLADVAQFRDRLNELACTELTEEDFIPVTQLDASVTVDEISVESIEKLQLLAPFGM
HNPKPKWIIDSVSIEHYKKIGSAQNHLKLVLEDKGVQLDGVGFGLGELADHMTPFSNASVIGELSINEWNNRKKPQIFLH
DVKIEHWQLFDVRGIKQVHKWNGLIPEENKKVICFNRATLEKLSLENDEVILLEDGPSLEGLVTDNASLVLLDLPTSKTI
LEELLKKGRPHRIYAHFFQEEDHFFSTMPTRDHFKWYYGFLTKRGSFDLNKHGDDLAKYKGWSKETIDFMSQVFFDLKFV
TIVNGFISLNPEKTKKDLSESLTYQKKQQQYELENELLYSSYQELKTWFNERIEESVTIEEEVKAWT

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=1044782 ACCB35_RS15420 WP_374054384.1 3037163..3039526(-) (recJ) [Rossellomorea sp. FM04394]
ATGTTAAACTCAAAAACACGTTGGTTGATGACAGAATCAGATCAACATAAAATATCAGAACTGGCAAATGAATTAAAAGT
ACCTTCGCTTGTGGCGAAATTATTAATCAACCGGGACTTGGACGACGTAGAAGAGGCTCGGAATTTTTTATTTGATACAG
GCGATTCATTTCACGATCCATTTTTATTTGAAGATATGAAGAAAGCAACGGAAAGAATCCACAAAGCCATTGAAAATGGC
GAAAGGATTCTTGTTTATGGGGACTACGACGCTGATGGTGTAAGTAGTACGTCAGTATTGATGACAGTGTTAAGGGACCT
GGGAGCAGATGTGGAATTCTATATCCCTAACCGTTTCAGTGAAGGGTATGGACCGAATGAAGGAGCTTTCCGCTGGGCTA
AGGATGAAGAATTCACGCTCATCATCACAGTGGATACAGGGATATCTGCAGTGAACGAAGCAAGATTGGCAAAAGAACTG
GAGATCGATTTGATCATTACAGATCACCATGAACCCGGACCGGAATTGCCGCCAGCCTTTGCCTTGATTCATCCAAAGGT
CGAAGGGACCACCTATCCATTTGGGGAACTTGCAGGAGTGGGAGTGGCATTCAAACTGGCCCATGCCCTCTACGGCGAAC
TGCCTGTTCACCTGCTTGATCTTGCCGCGATTGGGACCATCGCCGATCTAGTACCGTTAAGAGGAGAGAATCGCCTTCTC
GCCAAGCGTGGGATTGAAAATCTTCGTGTTTCAAACCGATTGGGTATTAAAGCCTTATGCAGGATAGCAAATTCCCACCA
GCACGAGATTACAGAGGAATCGATTGGATTCATGATTGCTCCCCGCATCAATGCTGTAGGTCGGTTAGGGGATGCAGACC
CTGCCGTCGATCTTATGCTCACAGAAGATGCTGAGGAAGCAAAGGCCCTGGCTGAAGAAATTGACAGCTTGAATAAAGAA
AGACAGGCGATTGTGTCTCAAATGACCGAAGAAGCGGTCGAGATGGTGGAGAATGATTTTCCCCTGAACGATAACCGTGC
CCTCGTGATTGGAAAAGAAGGCTGGAATCCGGGGGTCGTCGGAATTGTGGCTTCACGCTTAGTGGACAAGTTTTACCGTC
CGACCATCGTACTTAGTTACGATTCTGAGAAGGGAACGGCAAAGGGGTCTGCAAGAAGTATTGCAGGTTTTGATTTGTTC
AAGAATTTATCAACCTGCCGTGATATCCTTCCCCATTTCGGAGGACATCCCATGGCTGCAGGTATGACCTTACAGTTAGC
CGATGTAGCACAGTTCAGAGACCGATTAAATGAGTTGGCTTGCACTGAATTGACTGAAGAGGACTTTATACCCGTCACAC
AGCTTGATGCATCTGTTACAGTTGACGAAATTTCAGTAGAGTCGATTGAAAAGCTTCAGCTTCTGGCCCCTTTTGGAATG
CATAATCCAAAACCGAAGTGGATCATAGACAGTGTAAGCATCGAACATTATAAAAAAATCGGATCTGCACAAAATCACTT
GAAGCTGGTATTGGAAGACAAAGGCGTGCAACTGGATGGTGTCGGTTTTGGATTGGGAGAGCTGGCTGATCATATGACCC
CATTTTCCAATGCCTCTGTAATTGGTGAGTTATCCATAAATGAATGGAATAACCGTAAGAAGCCTCAAATATTTTTACAT
GATGTGAAAATTGAGCATTGGCAATTATTTGATGTCCGTGGGATCAAACAAGTCCATAAATGGAATGGACTCATACCTGA
AGAAAATAAAAAAGTCATTTGTTTTAATCGGGCCACTTTAGAAAAACTGAGTCTGGAAAATGATGAAGTGATACTGCTTG
AGGATGGTCCTTCACTTGAAGGCCTTGTAACCGATAATGCAAGTTTGGTGCTTCTGGATCTGCCGACTTCTAAAACAATA
CTTGAAGAGCTCTTGAAGAAGGGGCGTCCGCACCGTATTTATGCTCATTTCTTTCAGGAAGAAGACCATTTTTTCAGTAC
GATGCCGACGCGTGATCATTTCAAGTGGTATTATGGATTCTTAACAAAGCGTGGATCATTTGATTTAAATAAACATGGAG
ATGACCTGGCGAAATACAAAGGCTGGTCAAAAGAAACAATAGATTTCATGTCACAGGTGTTTTTTGATTTGAAGTTTGTT
ACAATAGTGAATGGATTTATTTCTCTCAATCCTGAGAAAACCAAGAAAGATCTTTCTGAATCTCTAACTTATCAGAAGAA
ACAACAACAATACGAGCTTGAAAACGAATTGTTATATTCTTCCTATCAAGAGTTGAAGACTTGGTTTAATGAAAGGATAG
AAGAGTCTGTTACAATTGAGGAGGAAGTAAAAGCATGGACTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(456-561)

DHHA1 domain (DHHA1)

(315-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.598

98.729

0.549

Multiple sequence alignment