Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   ACEN3N_RS09755 Genome accession   NZ_CP168228
Coordinates   2087991..2088374 (+) Length   127 a.a.
NCBI ID   WP_004830987.1    Uniprot ID   N9F1A6
Organism   Acinetobacter bereziniae strain 2024CK-01176     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2082991..2093374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3N_RS09725 (ACEN3N_09725) kdsB 2083785..2084546 (+) 762 WP_004830994.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACEN3N_RS09730 (ACEN3N_09730) - 2084584..2085564 (+) 981 WP_151806445.1 DNA polymerase III subunit delta' -
  ACEN3N_RS09735 (ACEN3N_09735) - 2085591..2085932 (+) 342 WP_004830992.1 PilZ domain-containing protein -
  ACEN3N_RS09740 (ACEN3N_09740) - 2085960..2086733 (+) 774 WP_046760311.1 TatD family hydrolase -
  ACEN3N_RS09745 (ACEN3N_09745) - 2086818..2087432 (+) 615 WP_004830990.1 TetR/AcrR family transcriptional regulator -
  ACEN3N_RS09750 (ACEN3N_09750) - 2087438..2088004 (+) 567 WP_004830989.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACEN3N_RS09755 (ACEN3N_09755) xcpV 2087991..2088374 (+) 384 WP_004830987.1 type II secretion system minor pseudopilin GspI Machinery gene
  ACEN3N_RS09760 (ACEN3N_09760) xcpW 2088377..2089030 (+) 654 WP_151797320.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ACEN3N_RS09765 (ACEN3N_09765) gspK 2089023..2089994 (+) 972 WP_151797321.1 type II secretion system minor pseudopilin GspK -
  ACEN3N_RS09770 (ACEN3N_09770) - 2090220..2090816 (+) 597 WP_004830984.1 6-carboxytetrahydropterin synthase -
  ACEN3N_RS09775 (ACEN3N_09775) ung 2090892..2091605 (+) 714 WP_004830983.1 uracil-DNA glycosylase -
  ACEN3N_RS09780 (ACEN3N_09780) - 2091602..2092723 (+) 1122 WP_373351106.1 enoyl-CoA hydratase/isomerase family protein -
  ACEN3N_RS09785 (ACEN3N_09785) tadA 2092730..2093254 (+) 525 WP_009586640.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14083.38 Da        Isoelectric Point: 9.7757

>NTDB_id=1043274 ACEN3N_RS09755 WP_004830987.1 2087991..2088374(+) (xcpV) [Acinetobacter bereziniae strain 2024CK-01176]
MKKNKGFTLIEVVVALAIFAVAAMALTKVAMQYTQSTANAILRTKAQFVAQNEISMMMINREWLTGTASKQITAQGETWQ
VDKKAESTLSPDVQKIDVQVSLFNTDTGKVEAGITNMVFYNYPIKEK

Nucleotide


Download         Length: 384 bp        

>NTDB_id=1043274 ACEN3N_RS09755 WP_004830987.1 2087991..2088374(+) (xcpV) [Acinetobacter bereziniae strain 2024CK-01176]
ATGAAGAAAAATAAAGGCTTTACCCTTATCGAAGTGGTAGTGGCATTGGCGATCTTTGCTGTTGCAGCAATGGCTTTGAC
TAAAGTTGCGATGCAATATACCCAATCTACAGCCAATGCCATTTTACGGACCAAAGCACAATTTGTTGCACAAAATGAAA
TTTCAATGATGATGATTAACCGAGAGTGGTTAACTGGAACAGCTTCAAAACAGATCACGGCTCAAGGTGAAACATGGCAA
GTGGATAAAAAAGCAGAGTCTACACTGAGTCCTGATGTGCAAAAAATCGATGTGCAGGTCAGTTTATTTAATACTGATAC
AGGTAAAGTGGAAGCAGGAATTACCAATATGGTGTTTTATAATTATCCAATCAAAGAAAAATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(43-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9F1A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

76

98.425

0.748

Multiple sequence alignment