Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ABRP31_RS25060 Genome accession   NZ_CP167995
Coordinates   5563719..5565938 (+) Length   739 a.a.
NCBI ID   WP_349972180.1    Uniprot ID   -
Organism   Pseudomonas caspiana strain WHRI 7043     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5558719..5570938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP31_RS25045 (ABRP31_025045) - 5560936..5562204 (-) 1269 WP_027901987.1 malic enzyme-like NAD(P)-binding protein -
  ABRP31_RS25050 (ABRP31_025050) - 5562498..5563301 (-) 804 WP_349972181.1 thermonuclease family protein -
  ABRP31_RS25055 (ABRP31_025055) rpmE 5563325..5563552 (-) 228 WP_087271113.1 50S ribosomal protein L31 -
  ABRP31_RS25060 (ABRP31_025060) priA 5563719..5565938 (+) 2220 WP_349972180.1 primosomal protein N' Machinery gene
  ABRP31_RS25065 (ABRP31_025065) argS 5566175..5567911 (+) 1737 WP_349972179.1 arginine--tRNA ligase -
  ABRP31_RS25070 (ABRP31_025070) - 5567913..5568593 (+) 681 WP_087271104.1 SPOR domain-containing protein -
  ABRP31_RS25075 (ABRP31_025075) hslV 5568979..5569509 (+) 531 WP_027901992.1 ATP-dependent protease subunit HslV -
  ABRP31_RS25080 (ABRP31_025080) hslU 5569578..5570915 (+) 1338 WP_349972178.1 HslU--HslV peptidase ATPase subunit -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 81865.26 Da        Isoelectric Point: 8.3770

>NTDB_id=1040996 ABRP31_RS25060 WP_349972180.1 5563719..5565938(+) (priA) [Pseudomonas caspiana strain WHRI 7043]
MPDAILRLALPSPLRRLFDYRAPAGVLRSALQPGMRLRVPFGRREMIGILIEIADHSEVPAEKLKPAIALLDEQAPLPPA
LFKLCLWTSQYYQHSLGDTLSWALPVLLRQGEPAESRQERFWQVAPNASVDDPRIARAPKQREALTTLAQHPHGVAHQLL
SKLMLNKESLNLLLAKELVQVEVRSHAPSARHEHWLAQPELPLNTEQRAACEAIRAGFESFHAFLLAGVTGSGKTEVYLQ
LIRETLEAGKQALVLIPEINLGPQTLARFEQRFNARIALLHSAVNDRDRLDAWLAARDGEADIIIGTRSALFTPMKNPGL
IIIDEEHDGSYKQQEGLRYHARDLALVRARQENIPIVLGSATPSLESLHNAYTGRYGLLRLNQRAGGAQQPKFMRLDVKS
RPLDSGISGPMQQAIGQTLAAGQQVLVFLNRRGFAPTLLCHDCGWLSGCPRCDARMTVHQRSGELRCHHCGHVERVPRQC
PSCGKVDLRPVGAGTERAEERLAILFPDYPVLRVDRDSTSRKDAMNQLFATIQRGQPCILVGTQMLAKGHHFPRVTLVSI
LDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGRVIIQTHLADHPLLIQLTEQGYFAFAEQALSERRAAGLPPFAHL
ALLRAEAHKPGQAEGFLDEACSVAEQLLNDMNLGGIELLGPVPAPMERRAGRYRAQLLLQSSARAPLHRLLASWLLALEQ
MPSGRQVRWSLDVDPVDLY

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=1040996 ABRP31_RS25060 WP_349972180.1 5563719..5565938(+) (priA) [Pseudomonas caspiana strain WHRI 7043]
GTGCCCGACGCCATTCTGCGCCTTGCCCTGCCCTCGCCACTGCGGCGCCTGTTCGACTATCGAGCGCCTGCAGGAGTGCT
GCGCAGTGCCTTGCAGCCAGGCATGCGCTTGCGAGTGCCATTCGGCCGCCGGGAAATGATCGGCATCCTGATCGAGATCG
CCGATCACAGCGAAGTGCCCGCCGAGAAGCTCAAGCCCGCCATCGCCCTGCTCGATGAACAAGCGCCGCTGCCTCCAGCG
CTGTTCAAATTGTGCCTGTGGACCTCTCAGTATTATCAGCACAGCCTCGGCGACACCTTGAGTTGGGCGCTGCCGGTGCT
GCTGCGCCAAGGCGAACCGGCAGAATCGCGTCAGGAACGCTTCTGGCAGGTTGCGCCAAATGCCAGCGTTGACGATCCGC
GTATCGCCCGGGCGCCCAAGCAGCGCGAAGCACTGACGACCCTTGCCCAGCACCCGCACGGCGTTGCGCATCAGTTACTG
AGCAAGCTGATGCTTAATAAAGAAAGCCTCAACCTGCTGCTGGCTAAAGAGCTGGTGCAAGTTGAAGTGCGCAGTCATGC
ACCCTCAGCGCGCCATGAACACTGGCTGGCCCAGCCGGAACTGCCACTCAACACTGAACAACGTGCCGCCTGCGAGGCAA
TTCGCGCCGGGTTCGAAAGCTTCCATGCGTTTCTGCTGGCGGGTGTTACCGGCAGCGGCAAAACCGAAGTCTATTTGCAG
TTGATCCGTGAAACCCTGGAAGCCGGGAAACAGGCGCTGGTGCTGATCCCGGAAATTAACCTGGGGCCGCAAACCCTGGC
GCGCTTTGAGCAGCGCTTCAACGCACGCATCGCGCTGCTGCATTCGGCGGTCAATGACCGTGATCGGCTGGATGCATGGC
TGGCAGCGCGGGATGGCGAAGCCGACATTATTATTGGTACCCGTTCGGCACTGTTCACGCCGATGAAGAATCCCGGTCTG
ATCATCATCGACGAAGAGCACGACGGCTCTTATAAACAGCAGGAAGGCCTGCGCTATCACGCTCGGGATCTGGCTCTGGT
GCGGGCACGCCAGGAAAACATCCCCATTGTGCTCGGCTCAGCCACGCCTTCGCTGGAAAGCCTGCACAACGCCTACACCG
GCCGTTACGGCCTGTTGCGCTTGAACCAGCGGGCGGGCGGTGCGCAGCAACCGAAATTCATGCGTCTGGACGTAAAAAGC
CGTCCACTGGACAGCGGTATCTCCGGACCGATGCAACAGGCCATCGGCCAGACCCTCGCTGCGGGCCAGCAAGTATTGGT
CTTTCTGAACCGACGGGGCTTTGCGCCGACGCTGCTTTGCCACGATTGCGGCTGGCTGTCGGGCTGCCCGCGATGTGATG
CGCGGATGACCGTGCATCAACGCTCCGGCGAGTTGCGCTGCCACCACTGTGGTCACGTCGAACGCGTGCCGCGCCAGTGC
CCGTCCTGCGGCAAAGTCGATTTGCGTCCGGTTGGCGCAGGCACCGAGCGCGCCGAAGAGCGTCTGGCCATTCTGTTTCC
GGATTACCCCGTATTACGGGTTGATCGCGACAGCACCTCGCGCAAAGACGCGATGAATCAACTGTTCGCGACCATTCAGC
GCGGCCAGCCTTGCATTCTGGTGGGCACGCAGATGCTCGCCAAAGGGCACCACTTTCCGCGTGTAACGCTGGTGTCGATT
CTGGATGCCGACGGAGGCCTGTTTTCCGGAGATTTCCGCGCCAGCGAGCGCATGGCACAGTTGATCGTACAGGTGGCCGG
GCGGGCCGGACGAGCTGAAGAACCGGGCCGGGTGATTATCCAGACGCATCTGGCAGACCATCCGCTGCTGATTCAACTCA
CCGAGCAAGGTTACTTCGCCTTCGCCGAGCAGGCCTTGAGTGAACGCCGCGCTGCGGGCTTGCCGCCTTTTGCGCATCTG
GCGCTTTTACGGGCAGAAGCGCATAAACCGGGCCAGGCCGAAGGGTTTCTTGATGAAGCCTGCTCGGTTGCCGAGCAACT
GTTGAACGACATGAATCTGGGCGGTATCGAACTGCTCGGCCCGGTTCCAGCACCGATGGAGCGCCGCGCCGGTCGTTATC
GAGCGCAATTGCTGCTGCAATCCAGCGCCCGCGCGCCGCTGCATCGGCTGCTTGCTTCCTGGCTATTGGCGCTGGAACAG
ATGCCGAGTGGCAGGCAGGTCAGGTGGTCGCTGGATGTGGATCCGGTGGATTTGTATTAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(207-367)

Primosomal protein N C-terminal domain (PriA_C)

(636-735)

3DNA-binding domain (3BD) (PriA_3primeBD)

(9-105)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(449-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

48.113

100

0.483

Multiple sequence alignment