Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   KJP51_RS08085 Genome accession   NZ_OX419576
Coordinates   1544816..1545265 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis isolate NRS6105     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539816..1550265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP51_RS08045 (NRS6105_07975) ctaE 1539833..1540456 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  KJP51_RS08050 (NRS6105_07980) ctaF 1540459..1540791 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  KJP51_RS08055 (NRS6105_07985) ctaG 1540818..1541711 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  KJP51_RS08060 (NRS6105_07990) ylbA 1541743..1542105 (-) 363 WP_003232238.1 YugN family protein -
  KJP51_RS08065 (NRS6105_07995) ylbB 1542245..1542691 (+) 447 WP_003221362.1 CBS domain-containing protein -
  KJP51_RS08070 (NRS6105_08000) ylbC 1542775..1543815 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  KJP51_RS08075 (NRS6105_08005) ylbD 1544047..1544445 (+) 399 WP_003232233.1 YlbD family protein -
  KJP51_RS08080 (NRS6105_08010) ylbE 1544461..1544700 (+) 240 WP_003232231.1 YlbE-like family protein -
  KJP51_RS08085 (NRS6105_08015) ylbF 1544816..1545265 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  KJP51_RS08090 (NRS6105_08020) ylbG 1545320..1545592 (+) 273 WP_015715839.1 YlbG family protein -
  KJP51_RS08095 (NRS6105_08025) rsmD 1545915..1546469 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KJP51_RS08100 (NRS6105_08030) coaD 1546474..1546959 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  KJP51_RS08105 (NRS6105_08035) spoVV 1546970..1548196 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  KJP51_RS08110 (NRS6105_08040) ylbK 1548377..1549159 (+) 783 WP_003232221.1 patatin family protein -
  KJP51_RS08115 (NRS6105_08045) sepM 1549161..1550186 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=1040907 KJP51_RS08085 WP_003221370.1 1544816..1545265(+) (ylbF) [Bacillus subtilis isolate NRS6105]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1040907 KJP51_RS08085 WP_003221370.1 1544816..1545265(+) (ylbF) [Bacillus subtilis isolate NRS6105]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment