Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   KJP64_RS02410 Genome accession   NZ_OX419565
Coordinates   469676..470110 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis isolate NRS6145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 464676..475110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP64_RS02380 (NRS6145_02360) ydaD 465325..466185 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  KJP64_RS02385 (NRS6145_02365) lyxE 466201..466704 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  KJP64_RS02390 (NRS6145_02370) ydaF 466792..467343 (+) 552 WP_014478866.1 GNAT family protein -
  KJP64_RS02395 (NRS6145_02375) ydaG 467419..467841 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  KJP64_RS02400 (NRS6145_02385) amj 468347..469156 (+) 810 WP_032722918.1 lipid II flippase Amj -
  KJP64_RS02405 (NRS6145_02390) ydzA 469201..469491 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  KJP64_RS02410 (NRS6145_02395) lrpC 469676..470110 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  KJP64_RS02415 (NRS6145_02400) topB 470175..472358 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  KJP64_RS02420 (NRS6145_02405) epsJ 472560..473648 (+) 1089 WP_003246551.1 lipoprotein -
  KJP64_RS02425 (NRS6145_02410) epsK 473629..474480 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=1039929 KJP64_RS02410 WP_003246585.1 469676..470110(+) (lrpC) [Bacillus subtilis isolate NRS6145]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1039929 KJP64_RS02410 WP_003246585.1 469676..470110(+) (lrpC) [Bacillus subtilis isolate NRS6145]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment