Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACCO40_RS18310 Genome accession   NZ_CP167793
Coordinates   3588626..3588967 (-) Length   113 a.a.
NCBI ID   WP_114151139.1    Uniprot ID   -
Organism   Bacillus spizizenii strain SHT-15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3583626..3593967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS18295 (ACCO40_18295) - 3583864..3586632 (+) 2769 WP_114151141.1 DEAD/DEAH box helicase -
  ACCO40_RS18300 (ACCO40_18300) ywpJ 3586762..3587619 (-) 858 WP_072565394.1 phosphatase YwpJ -
  ACCO40_RS18305 (ACCO40_18305) glcR 3587625..3588401 (-) 777 WP_003221778.1 transcriptional regulator GlcR -
  ACCO40_RS18310 (ACCO40_18310) ssbB 3588626..3588967 (-) 342 WP_114151139.1 single-stranded DNA-binding protein SsbB Machinery gene
  ACCO40_RS18315 (ACCO40_18315) ywpG 3589044..3589427 (-) 384 WP_014115448.1 DynA interaction protein YwpG -
  ACCO40_RS18320 (ACCO40_18320) - 3589604..3590014 (+) 411 WP_041521204.1 YwpF-like family protein -
  ACCO40_RS18325 (ACCO40_18325) - 3590156..3590794 (-) 639 WP_372402206.1 class A sortase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12521.28 Da        Isoelectric Point: 7.8150

>NTDB_id=1039451 ACCO40_RS18310 WP_114151139.1 3588626..3588967(-) (ssbB) [Bacillus spizizenii strain SHT-15]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENMVLYCQKGSLVGVSGRIQTR
SYENAEGVTVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1039451 ACCO40_RS18310 WP_114151139.1 3588626..3588967(-) (ssbB) [Bacillus spizizenii strain SHT-15]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCCGCCGGTGCGGCAGTCGC
ACACGTTACGCTCGCGGTAAATCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAGGCCGACTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACATGGTGTTGTATTGCCAAAAAGGTTCTCTTGTCGGCGTAAGCGGGCGGATTCAGACAAGA
AGCTATGAAAACGCAGAAGGCGTTACCGTATATGTAACGGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

95.575

100

0.956
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

93.805

0.54
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.148

95.575

0.46
  ssbA Streptococcus mutans UA159

45.283

93.805

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

43.81

92.92

0.407

Multiple sequence alignment