Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   QNH71_RS09070 Genome accession   NZ_OX352941
Coordinates   1864588..1865487 (+) Length   299 a.a.
NCBI ID   WP_074390054.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160_WT     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1859588..1870487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH71_RS09045 - 1859688..1861400 (+) 1713 WP_074390056.1 ABC transporter ATP-binding protein -
  QNH71_RS09050 - 1861502..1861675 (+) 174 WP_011921669.1 hypothetical protein -
  QNH71_RS09055 ruvB 1861970..1862971 (+) 1002 WP_024405856.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QNH71_RS09060 - 1862971..1863717 (+) 747 WP_024405857.1 GNAT family N-acetyltransferase -
  QNH71_RS09065 - 1863719..1864354 (+) 636 WP_074390055.1 HAD-IA family hydrolase -
  QNH71_RS09070 comR 1864588..1865487 (+) 900 WP_074390054.1 helix-turn-helix domain-containing protein Regulator
  QNH71_RS09075 - 1866113..1867051 (-) 939 Protein_1761 IS4 family transposase -
  QNH71_RS09080 - 1867191..1868411 (+) 1221 WP_074389014.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QNH71_RS09085 - 1868602..1870125 (+) 1524 WP_024405860.1 quinol oxidase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35382.26 Da        Isoelectric Point: 4.6029

>NTDB_id=1038071 QNH71_RS09070 WP_074390054.1 1864588..1865487(+) (comR) [Streptococcus suis isolate 861160_WT]
MNDKEFGQRVRQLRESASMTREQFCDDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLK
FDVLRTPTYGNEDLAEKRDAMMTEIYDDYYDELPEEEKIAIDAIQSRIDTLESGTAGFGKEILEDYFEQIFRKRKYELND
LLIVRLHLEYVRLSSCDSEIFRQFLKIIEHLHEQINIINSNDLFVLRDTLLSCVNILGSKKYYEPIPKIFDSVDKIIQST
QDFQKKPIVSVLKWKYALFVDKDRDEAEKNYLDAVLFAKLIENRELEQKIEEDWRVDNQ

Nucleotide


Download         Length: 900 bp        

>NTDB_id=1038071 QNH71_RS09070 WP_074390054.1 1864588..1865487(+) (comR) [Streptococcus suis isolate 861160_WT]
ATGAACGATAAGGAATTTGGACAGCGTGTACGTCAATTACGAGAATCTGCTAGTATGACACGTGAACAGTTTTGTGACGA
TGAACTGGAACTCTCTGTGCGCCAATTAACTCGTATTGAAGCAGGTGCTTCCAAGCCGACTTTTTCAAAGATTCAGTATA
TTGCAACTCGTTTAGGTATGGGACTTTACGAGCTTATGCCAGATTATGTATCTTTACCCGAAAGATATTCCAAGCTGAAG
TTTGATGTGCTTCGCACCCCAACTTATGGTAATGAAGATTTGGCGGAAAAGCGAGATGCCATGATGACAGAAATCTATGA
CGATTATTATGATGAATTGCCTGAGGAGGAGAAGATAGCAATAGATGCGATTCAATCACGAATTGATACTTTAGAGTCAG
GTACAGCAGGCTTTGGAAAAGAGATACTGGAAGACTACTTTGAACAAATTTTTCGCAAACGAAAGTATGAATTGAATGAT
TTGTTGATTGTTAGGCTCCATCTTGAATATGTTAGGTTATCTAGCTGTGATTCAGAAATATTTAGACAGTTTTTGAAAAT
TATAGAGCATTTACATGAGCAAATCAATATCATCAACTCAAATGATTTATTTGTTCTAAGGGATACATTATTATCCTGTG
TAAACATTTTGGGAAGTAAAAAATATTACGAACCAATACCAAAGATATTTGATAGTGTAGATAAGATTATACAGTCGACA
CAAGATTTTCAGAAAAAGCCCATTGTTAGTGTATTAAAATGGAAATATGCACTTTTTGTGGATAAGGATCGGGATGAGGC
TGAAAAGAATTATCTAGATGCGGTGCTATTTGCAAAATTGATAGAAAATAGAGAGTTAGAACAAAAGATTGAAGAAGATT
GGAGAGTTGACAATCAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_31)

(5-60)

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

99.666

100

0.997
  comR Streptococcus suis 05ZYH33

99.666

100

0.997
  comR Streptococcus suis D9

62.126

100

0.625
  comR Streptococcus mutans UA159

43.813

100

0.438
  comR Streptococcus pyogenes MGAS315

37.374

99.331

0.371

Multiple sequence alignment