Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   KHU1_RS01190 Genome accession   NZ_CP007242
Coordinates   261995..262429 (+) Length   144 a.a.
NCBI ID   WP_007410180.1    Uniprot ID   A7Z1H0
Organism   Bacillus amyloliquefaciens KHG19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 256995..267429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS01160 (KHU1_0226) - 257667..258527 (+) 861 WP_007410307.1 SDR family oxidoreductase -
  KHU1_RS01165 (KHU1_0227) - 258540..259043 (+) 504 WP_007410308.1 D-lyxose/D-mannose family sugar isomerase -
  KHU1_RS01170 (KHU1_0228) - 259131..259754 (+) 624 WP_042634839.1 GNAT family N-acetyltransferase -
  KHU1_RS01175 (KHU1_0229) - 259761..260183 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  KHU1_RS01180 (KHU1_0230) - 260681..261490 (+) 810 WP_012116831.1 lipid II flippase Amj family protein -
  KHU1_RS01185 (KHU1_0231) - 261528..261818 (-) 291 WP_003156265.1 DUF3817 domain-containing protein -
  KHU1_RS01190 (KHU1_0232) lrpC 261995..262429 (+) 435 WP_007410180.1 Lrp/AsnC family transcriptional regulator Machinery gene
  KHU1_RS01195 (KHU1_0233) - 262493..264679 (+) 2187 WP_032870446.1 DNA topoisomerase III -
  KHU1_RS01200 (KHU1_0234) - 264913..265998 (+) 1086 WP_042634841.1 hypothetical protein -
  KHU1_RS01205 (KHU1_0235) - 265979..266827 (+) 849 WP_042634843.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16492.13 Da        Isoelectric Point: 8.6776

>NTDB_id=103573 KHU1_RS01190 WP_007410180.1 261995..262429(+) (lrpC) [Bacillus amyloliquefaciens KHG19]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKMNADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=103573 KHU1_RS01190 WP_007410180.1 261995..262429(+) (lrpC) [Bacillus amyloliquefaciens KHG19]
ATGAAACTAGATAATGTGGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAACTGGGCAG
AAAAATCAAATTGTCAGCTCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCTGTTTCCTGCATTGTCGAAGCGACAGTGAAAAACGGAAAATACGATCAA
TTTAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
GAACGCGGACAGCCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z1H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80.851

97.917

0.792

Multiple sequence alignment