Detailed information NTG0103513

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: QUF19_RS07440
• Genome accession: NZ_AP028067
• Coordinates: 1635596..1637020 (-)
• Length: 474 a.a.
• NCBI ID: WP_286298249.1
• Uniprot ID: -
• Organism: Vibrio sp. FE10
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1630596..1642020

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUF19_RS07415	-	1631207..1631860 (+)	654	WP_286298242.1	thiopurine S-methyltransferase	-
QUF19_RS07420	purT	1632000..1633175 (-)	1176	WP_286298243.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
QUF19_RS07425	cdd	1633343..1634230 (-)	888	WP_286298245.1	cytidine deaminase	-
QUF19_RS07430	-	1634520..1635197 (-)	678	WP_286298246.1	LrgB family protein	-
QUF19_RS07435	-	1635200..1635571 (-)	372	WP_108082991.1	CidA/LrgA family protein	-
QUF19_RS07440	sbcB	1635596..1637020 (-)	1425	WP_286298249.1	exodeoxyribonuclease I	Machinery gene
QUF19_RS07445	-	1638003..1638437 (+)	435	WP_017104493.1	DUF4402 domain-containing protein	-
QUF19_RS07450	-	1638492..1638929 (+)	438	WP_029223395.1	DUF4402 domain-containing protein	-
QUF19_RS07455	-	1638926..1639636 (+)	711	WP_286298253.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54653.90 Da
• Isoelectric Point: 4.9120

>NTDB_id=103513 QUF19_RS07440 WP_286298249.1 1635596..1637020(-) (sbcB) [Vibrio sp. FE10]
MSSDNQSTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPGPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPDGINWPTNDEGFP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWVVPMAWHPTNQNAVIVVDLAKDPSPLLEMDADELRERLYTKRSELAEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLGLLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNILRETDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREYYESRLEDYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=103513 QUF19_RS07440 WP_286298249.1 1635596..1637020(-) (sbcB) [Vibrio sp. FE10]
ATGAGTTCAGATAATCAGTCGACCTATTTCTTTTTCGATTACGAAACATGGGGCGTTAGCCCAGCGAAAGATCGCCCGAG
TCAGTTCGCCGGTGTTCGTACCGACCAAGATTTCAACATTATCGGGGAGCCTTTAGTTATCTACTGCCAGCCTCCTGCTG
ATTATCTGCCTGGACCTGAAGCTGCATTAATCACTCGAATTACGCCTCAGAAAGCCATGTCACAAGGCCTACCTGAGCCT
GAGTTTATCGCTAAGATTCATGCCGAGCTTGCTAAGCCGAACACCACAAGCTTGGGATACAACAGCATTCGATTCGATGA
TGAAGTGACACGATACACCTGTTACCGTAACTTCATTGACCCATATGCGTGGAGCTGGCAGAACGGCAATTCACGTTGGG
ATTTATTGGATGTGATGCGTGCAGTCCATGCACTGCGCCCTGACGGTATTAACTGGCCAACAAACGATGAAGGTTTTCCA
AGTTTCAAACTGGAACACCTTTCTGTGGCAAACGGCATCGAACACGAAAACGCGCACGATGCGATGGCTGATGTTATTGC
GACTATCGAACTGGCTAAGAAGTTAAAGGCCGCACAACCTAAGATGTTTGATTACCTCTACAACATGCGCCACAAACGCA
AGTTGAATGAATTAGTCGACATCGTAAACATGACACCTTTAATGCACGTGTCAGGCATGTTTGGTCGTGATTGTAATTAC
ACAAGCTGGGTAGTGCCTATGGCGTGGCACCCAACCAACCAAAACGCGGTTATTGTGGTCGACCTAGCGAAAGATCCAAG
TCCTTTACTGGAAATGGATGCGGATGAACTAAGAGAAAGGCTTTATACCAAGCGCAGTGAGCTTGCTGAAGACGAACTGC
CAGTACCAATCAAACTGGTACAACTCAACAAGTGCCCTATTCTCGCGCCAGCAAAAACGCTCACCGCTGAAAACGCAGAA
ACGATCGGTATCGACCGTCAACAATGCTTGAAGAACCTAGGCCTATTACGTGAACATCCAGAGATCCGTGAAAAGCTGAT
CGGTTTGTATTCACAAGAACGTGAATACGAGAAAAGCGACGACGTAGACACACATCTTTACGACGGTTTCTTCTCTCCAG
CCGATAAAACCGCGATGAACATCCTTCGCGAAACTGACCCGAATAACTTGGCAGCACTGGACATCACTTTTGGTGACGAA
CGTATCAAGCCTTTGTTGTTCCGTTACCGCGCTCGCCATTTCCCATGGACGCTAGACGAAGCTGAACAACTGAAATGGGC
TAACCACTGTCGTGAGTATTATGAGAGTCGTTTAGAGGATTATATGTTGAACCTCGAAAACCTCGCGCATGAACACGAAA
GCGACGAGAAGAAAATGGCTATCTTAAAAGCGGTTTATCAGTACGTAGAAAAGTTAGCTAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.371	100	0.764