Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   DXE65_RS07980 Genome accession   NZ_LT992462
Coordinates   1495267..1495953 (-) Length   228 a.a.
NCBI ID   WP_000692886.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 5_3949     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1490267..1500953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE65_RS07935 rpmA 1490788..1491072 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  DXE65_RS07940 - 1491084..1491404 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  DXE65_RS07945 rplU 1491410..1491718 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  DXE65_RS07950 mreD 1492205..1492735 (-) 531 WP_001259929.1 rod shape-determining protein MreD -
  DXE65_RS07955 mreC 1492735..1493577 (-) 843 WP_000911033.1 rod shape-determining protein MreC -
  DXE65_RS07960 - 1493775..1493894 (-) 120 WP_000840603.1 hypothetical protein -
  DXE65_RS07965 - 1493968..1494441 (-) 474 WP_001236734.1 DUF4930 family protein -
  DXE65_RS07970 - 1494601..1494798 (+) 198 WP_000025835.1 hypothetical protein -
  DXE65_RS07975 - 1494915..1495199 (-) 285 WP_000171859.1 hypothetical protein -
  DXE65_RS07980 ysxA/radC 1495267..1495953 (-) 687 WP_000692886.1 RadC family protein Machinery gene
  DXE65_RS07985 - 1495950..1496657 (-) 708 WP_000261102.1 prepilin peptidase -
  DXE65_RS07995 - 1496919..1498190 (-) 1272 WP_001108343.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  DXE65_RS08000 - 1498203..1500833 (-) 2631 WP_000425349.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25311.24 Da        Isoelectric Point: 6.7572

>NTDB_id=1033334 DXE65_RS07980 WP_000692886.1 1495267..1495953(-) (ysxA/radC) [Staphylococcus aureus isolate 5_3949]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1033334 DXE65_RS07980 WP_000692886.1 1495267..1495953(-) (ysxA/radC) [Staphylococcus aureus isolate 5_3949]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.679

98.246

0.518
  radC Streptococcus pneumoniae TIGR4

41.038

92.982

0.382
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

95.614

0.382
  radC Streptococcus pneumoniae R6

40.566

92.982

0.377
  radC Streptococcus pneumoniae D39

40.566

92.982

0.377

Multiple sequence alignment